View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11921_low_6 (Length: 549)
Name: NF11921_low_6
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 5335484 - 5336014
Alignment:
| Q |
1 |
aggcgagggacttgtttcttagttgggcattaccaaaaggtatattatctacttcatttccttttgtttggaccatggttaaannnnnnnctctgttttt |
100 |
Q |
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| T |
5335484 |
aggcgagggacttgtttcttagttgggcactaccaaaaggtatattatctacttcatttccttttgtttggaccatggttaaatttttttctctgttttt |
5335583 |
T |
|
| Q |
101 |
gtacttctctagtgttctgcttgaactttcaatgcctagctaattcgctgatcattttttgcatgccatgttttatgttttccagatgttttgaagcagg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5335584 |
gtacttttctagtgttctgcttgaactttcaatgcctagctaattcgctgatcattttttgcatgccatgttttatgttttccagatgttttgaagcagg |
5335683 |
T |
|
| Q |
201 |
tttgcgacctatccgatcaagataatgatagcatgctttctctcaacgagttttgtattgcactgcacctaatggagcgacatagggaaggacatgctct |
300 |
Q |
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| T |
5335684 |
tttgcgacctatccgatcaagataatgatagcatgctttctctcaacgagttttgtattgcactgcacctaatggagcgacacagggaaggacatgctct |
5335783 |
T |
|
| Q |
301 |
tccagctgtacttccgaataacattcttcttgatttaccgactagtggtcaacctgccaatctccttagtcctgtaacttggggaaatcagtcaggtttg |
400 |
Q |
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| T |
5335784 |
tccagctgtacttccgaataacattcttcttgatttaccgactagtggtcaacctgccaatctccttagtcctgtaacttggggaaatcagtcaggtttg |
5335883 |
T |
|
| Q |
401 |
taccgaagaactaccatgcttttttgggttattatggaaactattttgttctataatttcttatctcttcctccttttatcttcgaaaggtgttcaacaa |
500 |
Q |
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| T |
5335884 |
taccgaagaactaccatgcttttttgggttattatggaaactattttgttctataatttcttatctcttcctccttttatcttcgaaaggtgttcaacaa |
5335983 |
T |
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| Q |
501 |
cagcaaatgatgactggatctggggctcaac |
531 |
Q |
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| T |
5335984 |
cagcaaatgatgactggatctggggctcaac |
5336014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 43471483 - 43472008
Alignment:
| Q |
1 |
aggcgagggacttgtttcttagttgggcattaccaaaaggtatattatctacttcatttccttttgtttggaccatggttaaannnnnnnctctgttttt |
100 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||| || | |||| |||||||||| |
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| T |
43471483 |
aggcgaggaacttgtttcttagttggcaattaccaagaggtatattttctacttcctttccttttgtttggatcaggagtaaaatgatttctctgttttt |
43471582 |
T |
|
| Q |
101 |
gtacttctctagtgttctgcttg--aactttcaatgcctagctaattcgctgatcattttttgcatgccatgttttatgttttccagatgttttgaagca |
198 |
Q |
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||||||||| |||||||| || || | |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
43471583 |
ctacttctctggtgttctgggtgtaaattctcaatggctagctaattcgctgatcattttttgcttgccatgttttatgttttccagaggttttgatgca |
43471682 |
T |
|
| Q |
199 |
ggtttgcgacctatccgatcaagataatgatagcatgctttctctcaacgagttttgtattgcactgcacctaatggagcgacatagggaaggacatgct |
298 |
Q |
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||| || |||||||| |||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||| || ||||| |||| |||| |
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| T |
43471683 |
ggtctgggacctatctgatcaagataatgatagcatgctttcactcagagagttttggattgcactgtacctaatggagcgccacagggagggacgtgct |
43471782 |
T |
|
| Q |
299 |
cttccagctgtacttccgaataacattcttcttgatttac---cgactagtggtcaacctgccaatctccttagtcctgtaacttggggaaatcagtcag |
395 |
Q |
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|||||| ||||||||| ||||||||||||| |||| ||| |||||| |||||||||||||||||||| | ||| |||||||||||||| ||||||| |
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| T |
43471783 |
cttccaagtgtacttccaaataacattcttcctgatataccgacgactactggtcaacctgccaatctccacactcccgtaacttggggaaaccagtcag |
43471882 |
T |
|
| Q |
396 |
gtttgtaccgaagaactaccatgctttttt-gggttattatggaaactattttgttctataatttcttatctcttcctccttttatcttcgaaaggtgtt |
494 |
Q |
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||||||||| ||||||| | ||||||||| ||| ||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||| |
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| T |
43471883 |
gtttgtaccaaagaactggcgtgcttttttgggggtattacggaaactatttggttctataatttcttttctcttcttccttttatctttgaaaggtgtt |
43471982 |
T |
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| Q |
495 |
caacaacagcaaatgatgactggatc |
520 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
43471983 |
caacaacagcaagggatgactggatc |
43472008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 54127699 - 54127756
Alignment:
| Q |
183 |
cagatgttttgaagcaggtttgcgacctatccgatcaagataatgatagcatgctttc |
240 |
Q |
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||||||| || ||| |||| || ||| |||| |||||||||||||||||||||||||| |
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| T |
54127699 |
cagatgtcttaaagaaggtgtgggacttatctgatcaagataatgatagcatgctttc |
54127756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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