View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11921_low_7 (Length: 489)
Name: NF11921_low_7
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_7 |
 | |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 11439535 - 11439065
Alignment:
| Q |
19 |
tcaagcccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11439535 |
tcaagcccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatat |
11439436 |
T |
|
| Q |
119 |
caaaatattcataatatcaatcatcctttgctcactacaaaccctcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttc |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
11439435 |
caaaatattcataatttcaatcatcctttactcacttcaaaccctcatgttcttgtccccttcttggaggttgacctttactatgataaagattatgttc |
11439336 |
T |
|
| Q |
219 |
ctaacctcaattcattatcccctccaagactctttgcaacacacattccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggttta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11439335 |
ctaacctcaattcattatcccctccaagactctttgcaacacacattccatatgagttgttgccaaaatctgtaaaagagtcaagttgtaaggtggttta |
11439236 |
T |
|
| Q |
319 |
tttttgtagagatcctaaagacacttttgcttcattatggcatttctcaaacaaggtaagatcacaaagtattggaaaacttccatgagaagagtctttt |
418 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
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|
| T |
11439235 |
tctttgtagagatcctaaagatacttttgcttcactatggcatttctcaaacaaggtaagatcacaaagtagtggaacacttccattagaagagtctttt |
11439136 |
T |
|
| Q |
419 |
gataacattactagaggagtgactttgttttaaaccttttgggatcatgtattaggttattggaaggaaag |
489 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |
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|
| T |
11439135 |
cataactttactagaggagtgactttgtttggacccttttgggagcatgtattaggttattggaaggaaag |
11439065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 63 - 489
Target Start/End: Original strand, 15460773 - 15461199
Alignment:
| Q |
63 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
162 |
Q |
| |
|
||||||||||||||||||||||||| | || || || | ||||| || | ||||| |||||||||| ||| ||| ||||||||||||||||| ||||| |
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|
| T |
15460773 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
15460872 |
T |
|
| Q |
163 |
tcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgcaacacac |
262 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| ||| || |||||| | |||| | | |||||||| || ||||||| || ||| | ||||| |
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|
| T |
15460873 |
tcatgttcttgttcctttcttggagcttagcctttacatcgagaaagatattcttcccgatattaattcattttcagctccaaggctattttctacacat |
15460972 |
T |
|
| Q |
263 |
attccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggtttatttttgtagagatcctaaagacacttttgcttcattatggcatt |
362 |
Q |
| |
|
|||| || | | |||||||||||| ||||||| |||| ||||||| |||| ||||| |||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
15460973 |
gttccttacaaatcattgccaaaatctataaaagattcaacttgtaaggtggtgtatttgtgtagagatcctaaagacacttttgcttcaatgtggcatt |
15461072 |
T |
|
| Q |
363 |
tctcaaacaaggtaagatcacaaagtattggaaaacttccatgagaagagtcttttgataacattactagaggagtgactttgttttaaaccttttggga |
462 |
Q |
| |
|
|| |||||||| | || |||||| || | || |||| | ||||||||| ||||| || || ||||||| |||| ||||||| | |||||||||| |
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|
| T |
15461073 |
tcacaaacaagattaggccacaaaatagagaaacccttcaactagaagagtcatttgagaaattttctagaggtgtgagtttgtttggacccttttggga |
15461172 |
T |
|
| Q |
463 |
tcatgtattaggttattggaaggaaag |
489 |
Q |
| |
|
||| ||||||| || ||||| ||||| |
|
|
| T |
15461173 |
acatttattaggatactggaaagaaag |
15461199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 11317959 - 11317484
Alignment:
| Q |
19 |
tcaagcccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaaccttt-gctttaataaaccgcaaaaaata |
117 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||| || ||| ||||| |||| ||| | ||||| |
|
|
| T |
11317959 |
tcaagcccttgatactgatatcctcatagttaccactccaaaagcaggcaccacttggcttaaagcattgactttttgctttgctaaatcgcgacaaata |
11317860 |
T |
|
| Q |
118 |
tcaaaatattcataatat------caatcatcctttgctcactacaaaccctcatgttcttgttcccttcttggaggttgacctatactatgataaagat |
211 |
Q |
| |
|
| || |||| || ||| ||| ||||| ||||||||||| || ||||||| |||||||||||| |||||| ||| || ||||| |||||| |
|
|
| T |
11317859 |
ttcaattattgatcatactaagaacaaccatccattgctcactaccaatcctcatggtcttgttccctttttggagtctgatctttactac---aaagat |
11317763 |
T |
|
| Q |
212 |
tatgttccta-acctcaattcattatcccctccaagactctttgcaacacacattccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaag |
310 |
Q |
| |
|
| |||| || || |||| ||||||| || | |||||||| | ||||| || | ||||| || ||||| |||||||| |||||||||| ||| ||| |
|
|
| T |
11317762 |
tttgtttcttgacgtcaaaacattatcttcttcgagactcttctctacacatctttcttatgaattattgccgaaatctgtgaaagagtcaacttgcaag |
11317663 |
T |
|
| Q |
311 |
atggtttatttttgtagagatcctaaagacacttttgcttcattatggcatttctcaaacaaggtaagatcacaaagtattggaaaacttccatgagaag |
410 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||| |||| | ||||||||| ||||||| | ||| ||||||||| |||| ||||||| | ||| |
|
|
| T |
11317662 |
gtggtgtatctatgtagagatcctaaagacacttttgtttcactttggcatttcacaaacaaccttagagcacaaagtagaggaacacttccactacaag |
11317563 |
T |
|
| Q |
411 |
agtcttttgataacattactagaggagtgactttgttttaaaccttttgggatcatgtattaggttattggaaggaaag |
489 |
Q |
| |
|
|| ||||||| || || ||||||||||| || ||| | |||||||||| |||||||| | ||||||||| |||| |
|
|
| T |
11317562 |
aggcttttgagaatttttgtagaggagtgagttcttttggacccttttgggagcatgtattggtatattggaagaaaag |
11317484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 27504415 - 27504813
Alignment:
| Q |
19 |
tcaagcccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatat |
118 |
Q |
| |
|
||||||| || |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| || |||||||| |||||||| || |||||| |
|
|
| T |
27504415 |
tcaagccattgatacagatattatcttagttacaaatcccaaatcaggtaccacttggctcaaagcattgacttttgctttgataaaccgtaacaaatat |
27504514 |
T |
|
| Q |
119 |
caaaatattcataatatcaatcatcctttgctcactacaaaccctcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttc |
218 |
Q |
| |
|
| |||||||||||| | |||||||||| |||||| | |||||||||||||||||||| ||| ||||| || |||| |||||||| | ||| ||||| |
|
|
| T |
27504515 |
ccaaatattcataaaa---atcatcctttactcacttccaaccctcatgttcttgttcctttcatggagattaacctttactatgaaactgatattgttc |
27504611 |
T |
|
| Q |
219 |
ctaacctcaattcattatcccctccaagactctttgcaacacacattccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggttta |
318 |
Q |
| |
|
|| | ||||||||| |||||||||||||| |||| | ||||||| ||| |||| |||||||||||||||| | |||||||| | |||||| |||| || |
|
|
| T |
27504612 |
ctgaactcaattcactatcccctccaagaatcttctccacacacaatccttatgttttgttgccaaaatctttgaaagagtccaactgtaaggtggtgta |
27504711 |
T |
|
| Q |
319 |
tttttgtagagatcctaaagacacttttgcttcattatggcatttctcaaacaaggtaagatcacaaagtattggaaaacttccatgagaagagtctttt |
418 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |||||||| |||| |||||||| ||||||| ||||| |
|
|
| T |
27504712 |
tctttgtagagatcctaaagacacttttgtttcactttggcatttctcaaacaagctaagagaacaaagtagaggaacacttccattagaagaggctttt |
27504811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 27499505 - 27499034
Alignment:
| Q |
19 |
tcaagcccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatat |
118 |
Q |
| |
|
||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||| |
|
|
| T |
27499505 |
tcaagccctagattcagatatcatcttagttaccgctcccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatat |
27499406 |
T |
|
| Q |
119 |
caaaatattcataatatcaatcatcctttgctcactacaaaccctcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttc |
218 |
Q |
| |
|
| || ||||||||| ||| ||||||||||||| | | || || ||| ||||||||||||||||||| ||||||| ||| ||||||||| ||||||| |
|
|
| T |
27499405 |
ccaattattcataa---caaccatcctttgctcatttccaatccccattctcttgttcccttcttggagattgacctttacagtgataaagactatgttc |
27499309 |
T |
|
| Q |
219 |
ctaacctcaattcattatcccctccaagactctttgcaacacacattccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggttta |
318 |
Q |
| |
|
||||||| || || ||||| | |||||||||||| | ||||| ||||| | || |||||||||||||||||| ||||| |||| ||| ||| | || || |
|
|
| T |
27499308 |
ctaaccttaactctttatctcatccaagactcttctccacacatattccttgtgctttgttgccaaaatctgtgaaagaatcaacttgcaaggttgtgta |
27499209 |
T |
|
| Q |
319 |
tttttgtagagatcctaaagacacttttgcttca--tta---tggcatttctcaaacaaggtaagatcacaaagtattggaaaacttccatgagaagagt |
413 |
Q |
| |
|
| | ||||||||||||||||||| |||| |||| ||| ||||||||| |||||||||||||| |||| |||| ||| |||||||| ||||||| |
|
|
| T |
27499208 |
tctgtgtagagatcctaaagacatgtttgtttcactttactttggcatttcacaaacaaggtaagagcacagagtagaggaccacttccattagaagagg |
27499109 |
T |
|
| Q |
414 |
cttttgataacattactagaggagtgactttgttttaaaccttttgggatcatgtattaggttattggaaggaaa |
488 |
Q |
| |
|
||||||| | || ||||||||||| || | | | |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27499108 |
cttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggatattggaaggaaa |
27499034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 389
Target Start/End: Original strand, 27544112 - 27544235
Alignment:
| Q |
266 |
ccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggtttatttttgtagagatcctaaagacacttttgcttcattatggcatttct |
365 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||| ||| ||| |||| ||| ||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
27544112 |
ccatatgattcattgccaaattctgcgaaagagtcaacttgcaaggtggtgtatctttgtagagatccaaaagacacttttgtttcgcactggcatttca |
27544211 |
T |
|
| Q |
366 |
caaacaaggtaagatcacaaagta |
389 |
Q |
| |
|
|||||||| ||||| ||||||||| |
|
|
| T |
27544212 |
caaacaagctaagagcacaaagta |
27544235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 27496989 - 27496888
Alignment:
| Q |
278 |
ttgccaaaatctgtaaaagagtcaagttgtaagatggtttatttttgtagagatcctaaagacacttttgcttcattatggcatttctcaaacaaggtaa |
377 |
Q |
| |
|
||||||||||| || |||||||||| ||| ||| | || || | ||||||||||||||||||| |||| ||||| ||||| ||||| |||||||||||| |
|
|
| T |
27496989 |
ttgccaaaatcagtgaaagagtcaacttgcaaggtagtgtacatgtgtagagatcctaaagacatttttacttcactatggtatttcacaaacaaggtaa |
27496890 |
T |
|
| Q |
378 |
ga |
379 |
Q |
| |
|
|| |
|
|
| T |
27496889 |
ga |
27496888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 63 - 489
Target Start/End: Complemental strand, 1419 - 993
Alignment:
| Q |
63 |
caggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaatattcataatatcaatcatcctttgctcactacaaaccc |
162 |
Q |
| |
|
||||||||||||||||||||||||| | || || || | ||||| || | ||||| |||||||||| ||| ||| ||||||||||||||||| ||||| |
|
|
| T |
1419 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcatgataacaaccatcctttgctcactaccaaccc |
1320 |
T |
|
| Q |
163 |
tcatgttcttgttcccttcttggaggttgacctatactatgataaagattatgttcctaacctcaattcattatcccctccaagactctttgcaacacac |
262 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| ||| || |||||| | |||| | | |||||||| || ||||||| || ||| | ||||| |
|
|
| T |
1319 |
tcatgttcttgttcctttcttggagcttagcctttacatcgagaaagatattcttcccgatattaattcattttcagctccaaggctattttctacacat |
1220 |
T |
|
| Q |
263 |
attccatatgatttgttgccaaaatctgtaaaagagtcaagttgtaagatggtttatttttgtagagatcctaaagacacttttgcttcattatggcatt |
362 |
Q |
| |
|
|||| || | | |||||||||||| ||||||| |||| ||||||| |||| ||||| |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1219 |
gttccttacaaatcattgccaaaatctataaaagattcaacttgtaaggtggtgtatttgtgtagagatcctaaagacacttttgcttcaatgtggcatt |
1120 |
T |
|
| Q |
363 |
tctcaaacaaggtaagatcacaaagtattggaaaacttccatgagaagagtcttttgataacattactagaggagtgactttgttttaaaccttttggga |
462 |
Q |
| |
|
|| |||||||| | || |||||| || | || |||| | ||||||||| ||||| || || ||||||| |||| ||||||| | |||||||||| |
|
|
| T |
1119 |
tcacaaacaagattaggccacaaaatagagaaacccttcaactagaagagtcatttgagaaattttctagaggtgtgagtttgtttggacccttttggga |
1020 |
T |
|
| Q |
463 |
tcatgtattaggttattggaaggaaag |
489 |
Q |
| |
|
||| ||||||| || ||||| ||||| |
|
|
| T |
1019 |
acatttattaggatactggaaagaaag |
993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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