View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11921_low_8 (Length: 456)
Name: NF11921_low_8
Description: NF11921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11921_low_8 |
 | |
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| [»] chr8 (7 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 38310162 - 38309707
Alignment:
| Q |
1 |
aaagttaaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgcttgctccgtttgtacatcaccatcaactttcttcattgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38310162 |
aaagttaaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgcttgctccgtttgtacatcaccatcaactttcttcattgttt |
38310063 |
T |
|
| Q |
101 |
cttcaaagtcgccgtcatcatcatcgccgtcgtctactccatctacataccataattgaggaggatgataattaaattgaacagtggctatcaaaacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38310062 |
cttcaaagtcgccgtcatcatcatcgccatcgtctactccatctacatatcataattgaggaggataataattaaattgaacagtggctatcaaaacaat |
38309963 |
T |
|
| Q |
201 |
taaatcatatatatttacattcaaattacataaattaccattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38309962 |
taaatcatatatatttacattcaaattacataaattaccattgccaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggc |
38309863 |
T |
|
| Q |
301 |
aacatacgatctttatatttgttaaacacacgtgagcccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38309862 |
aacatacgatctttatatttgttaaacacacgtgagcccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggcca |
38309763 |
T |
|
| Q |
401 |
gaattgatagatccggaaatcgattattatttctcttccaccactgtaatacatcc |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38309762 |
gaattgatagatccggaaatcgattattatttctcttccaccactgtaatacatcc |
38309707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 74 - 456
Target Start/End: Complemental strand, 38301447 - 38301065
Alignment:
| Q |
74 |
catcaccatcaactttcttcattgtttcttcaaagtcgccgtcatcatcatcgccgtcgtctactccatctacataccataattgaggaggatgataatt |
173 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||| || |||| |||| | || ||| ||||||||||||| ||||||||| |||| | |||||| |
|
|
| T |
38301447 |
catcaacataaacttcattcattgtttcttcaaagtcatcgccatcgccatcatcatcatcttctccatctacatatcataattgaagaggtttataatt |
38301348 |
T |
|
| Q |
174 |
aaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaattacataaattaccattgctaacaaaattgtgcaaccaagtgcgagta |
273 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38301347 |
caattgaacagtggttatcaaaccaataaaatcatatctatttacattcaaattccataaattaccattattaacaaaattgtgcaaccaggtgcgagta |
38301248 |
T |
|
| Q |
274 |
catattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgagcccatgcaaaactcaaaatcagatgcgacagtggtaa |
373 |
Q |
| |
|
|| ||||||||||||||||| | |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
38301247 |
cacattctagtttccacattcatcggcaacatacgatctttatacttgttaaagacgcgtgagcccatgcaaaactcaaaatcggaagcgacggtggtaa |
38301148 |
T |
|
| Q |
374 |
tgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctcttccaccactgtaatacatcc |
456 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38301147 |
tgggaacacttaacaagtcgcaagccaatattgatagatctggaaatcgattattattactcttccaccactgtaatacatcc |
38301065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 138 - 456
Target Start/End: Complemental strand, 38307277 - 38306965
Alignment:
| Q |
138 |
tccatctacataccataattgaggaggatgataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaattacataaatta |
237 |
Q |
| |
|
|||||||||| | ||||||||| |||| | | ||| |||||| |||||| ||||||||||| ||||||||| ||||||||||||| | |||| |
|
|
| T |
38307277 |
tccatctacaaatcataattgaagaggttaacaatgtaattgaccagtggttatcaaaacaacagaatcatata------cattcaaattacacagatta |
38307184 |
T |
|
| Q |
238 |
ccattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgagc |
337 |
Q |
| |
|
|||| ||||| ||||||| || |||| |||||| ||| |||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38307183 |
ccatcactaacgaaattgtacagccaactgcgagcacaaattctagtttccacatccatcggcaacatacgatctttatacttgttaaacacgcgtgagc |
38307084 |
T |
|
| Q |
338 |
ccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctctt |
437 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||| |||||||||||| || ||||| ||||||||||| ||| |||||| |||||| ||||| |
|
|
| T |
38307083 |
ccatgcaaaattcaaaatcagaagccacagtggtaatgggaacacttaacaagtcacaagccagtattgatagatctggatatcgatcattattactctt |
38306984 |
T |
|
| Q |
438 |
ccaccactgtaatacatcc |
456 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
38306983 |
ccaccattgtaatacatcc |
38306965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 142 - 456
Target Start/End: Complemental strand, 38318035 - 38317718
Alignment:
| Q |
142 |
tctacataccataattgaggaggatgataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaattacataa---attac |
238 |
Q |
| |
|
|||||||| || |||||| |||| | ||||| ||||||| || ||| ||||| || ||| |||||||| |||||||||| ||| ||||| ||||| |
|
|
| T |
38318035 |
tctacatatcacaattgaagaggttaataataaaattgaccactggttatcagaagaatacaatcatatttatttacatttaaagaacatagtagattac |
38317936 |
T |
|
| Q |
239 |
cattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgtgagcc |
338 |
Q |
| |
|
||| ||| |||||||||| |||||| |||||||||| ||||||||||||||||| | |||| | ||||||||| ||| |||||||| |||||||| || |
|
|
| T |
38317935 |
catcgcttacaaaattgtataaccaactgcgagtacagattctagtttccacattcgtgggcagcgtacgatcttcatacttgttaaagacacgtgaacc |
38317836 |
T |
|
| Q |
339 |
catgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttctcttc |
438 |
Q |
| |
|
||||||||| ||| ||||||| || ||||||| |||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38317835 |
catgcaaaattcagaatcagaagcaacagtggcaatgggaacacttaacaagtcgcaagctaatattgatagatccggaaatcgattattatttctcttc |
38317736 |
T |
|
| Q |
439 |
caccactgtaatacatcc |
456 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
38317735 |
caccattgtaatacatcc |
38317718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 121 - 456
Target Start/End: Complemental strand, 38314644 - 38314308
Alignment:
| Q |
121 |
tcatcgccgtcgtctactccatctacataccataattgaggaggatgataattaaattgaaca-gtggctatcaaaacaattaaatcatatatatttaca |
219 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||| || ||| | |||| |||||| || |||| |||||||||||| | | || |||||| ||| |
|
|
| T |
38314644 |
tcatcgtcgtcgtcttctccatctacatatcataatcgaagagattaataactaaattacccaggtggttatcaaaacaatacacttatttatattcaca |
38314545 |
T |
|
| Q |
220 |
ttcaaattacataaattaccattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatt |
319 |
Q |
| |
|
|| |||||| ||| |||||||| ||||||||||||| || |||| ||||||| || |||||||||||||||| |||| ||||| ||||||||||| | |
|
|
| T |
38314544 |
tttaaattagatagattaccatcactaacaaaattgtacagccaactgcgagtgcaaattctagtttccacatccattggtaacatgcgatctttatact |
38314445 |
T |
|
| Q |
320 |
tgttaaacacacgtgagcccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaa |
419 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| || || |||| |||||||| ||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
38314444 |
tgtttaacacacgtgagcccatgcaaaattcaaaatcagaagccactgtggcaatgggaacacttaacaagtcgcaagccaatattgatagatctggaaa |
38314345 |
T |
|
| Q |
420 |
tcgattattatttctcttccaccactgtaatacatcc |
456 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
38314344 |
tcgatttgaattactcttccaccattgtaatacatcc |
38314308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 128 - 456
Target Start/End: Complemental strand, 38322135 - 38321807
Alignment:
| Q |
128 |
cgtcgtctactccatctacataccataattgaggaggatgataattaaattgaacagtggctatcaaaacaattaaatcatatatatttacattcaaatt |
227 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||| ||| | ||||||||| ||| | | | || ||||||||| |||||||| |||||||| | ||||| |
|
|
| T |
38322135 |
cgtcgtcttctccaactacatatcataattgaaaaggttaataattaaagtgacaactagttaccaaaacaatacaatcatatgtatttacacttaaatt |
38322036 |
T |
|
| Q |
228 |
acataaattaccattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaac |
327 |
Q |
| |
|
|| || |||||||| || ||||||||||| ||||||| |||||||||| | ||||| |||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
38322035 |
acgtagattaccatcgcgaacaaaattgtacaaccaattgcgagtacaaaatctagcatccaaattcatcggtaacatacgatctttatacttgttaaaa |
38321936 |
T |
|
| Q |
328 |
acacgtgagcccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattat |
427 |
Q |
| |
|
|| | |||| |||||||| || |||||||| |||| |||| ||| ||||| |||||||||||| | |||| ||||| ||||| ||||||||||||| |
|
|
| T |
38321935 |
acgtgcaagcctatgcaaaaatccaaatcagaagcgatagtgttaacgggaacacttaacaagtctcgagccaatattgaaagatctggaaatcgattat |
38321836 |
T |
|
| Q |
428 |
tatttctcttccaccactgtaatacatcc |
456 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
38321835 |
tattactcttccaccactgtaatacatcc |
38321807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 140 - 456
Target Start/End: Complemental strand, 38326841 - 38326519
Alignment:
| Q |
140 |
catctacataccataattgaggaggatgataattaaattgaacagtggctatcaaaacaa-----ttaaatc-atatatatttacattcaaattacataa |
233 |
Q |
| |
|
|||||||||| || |||||| |||| | |||||||||| || | |||| ||||||||||| ||| || ||||| ||| | ||| ||||||||||| |
|
|
| T |
38326841 |
catctacatatcaaaattgaagaggttaataattaaatagacctgtggttatcaaaacaacacagttacatatatatacattaaaatttaaattacataa |
38326742 |
T |
|
| Q |
234 |
attaccattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacgt |
333 |
Q |
| |
|
| |||||||||| |||||||||| ||||||| ||| |||||| ||||| | ||||||||| | |||| |||| | |||||||| || | ||| || ||| |
|
|
| T |
38326741 |
agtaccattgctgacaaaattgtacaaccaactgcaagtacagattctggcttccacattcataggcagcataaggtctttatacttttcaaatacgcgt |
38326642 |
T |
|
| Q |
334 |
gagcccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattatttc |
433 |
Q |
| |
|
| ||||||||||| || ||||||||||||||||||| |||||||| |||||||||||| || |||| |||||||||||| ||||||| ||||| ||| | |
|
|
| T |
38326641 |
gcacccatgcaaaattccaaatcagatgcgacagtggcaatgggaacacttaacaagtcacaagccaaaattgatagatctggaaatcaattataattac |
38326542 |
T |
|
| Q |
434 |
tcttccaccactgtaatacatcc |
456 |
Q |
| |
|
|||||||||| | |||||||||| |
|
|
| T |
38326541 |
tcttccaccattctaatacatcc |
38326519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 233 - 456
Target Start/End: Original strand, 38849395 - 38849618
Alignment:
| Q |
233 |
aattaccattgctaacaaaattgtgcaaccaagtgcgagtacatattctagtttccacattatttggcaacatacgatctttatatttgttaaacacacg |
332 |
Q |
| |
|
||||||| | ||||| |||||||| ||||||| |||||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
38849395 |
aattaccctcgctaaaaaaattgtacaaccaactgcgagtacaaattctagcttccacattcatcggcaacatacgatctttatacttgttaaagacacg |
38849494 |
T |
|
| Q |
333 |
tgagcccatgcaaaactcaaaatcagatgcgacagtggtaatgggaaaacttaacaagtcgcaggccagaattgatagatccggaaatcgattattattt |
432 |
Q |
| |
|
||||||||||||||| ||| ||||||| || |||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
38849495 |
tgagcccatgcaaaattcagaatcagaagctacagcggcaatgggaacacttaacaagtcgcaggccaatattgatagatccggaaatcgatcattatta |
38849594 |
T |
|
| Q |
433 |
ctcttccaccactgtaatacatcc |
456 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
38849595 |
ctcttccaccattgtaatacatcc |
38849618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 9254850 - 9254794
Alignment:
| Q |
221 |
tcaaattacataaattaccattgctaacaaaattgtgcaaccaagtgcgagtacata |
277 |
Q |
| |
|
|||||||| | || ||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
9254850 |
tcaaattaaacaagttaccattgctaacaaaatcatgcatccaattgcgagtacata |
9254794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 9315400 - 9315456
Alignment:
| Q |
221 |
tcaaattacataaattaccattgctaacaaaattgtgcaaccaagtgcgagtacata |
277 |
Q |
| |
|
|||||||| | || ||||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
9315400 |
tcaaattaaacaagttaccattgctaacaaaatcatgcatccaattgcgagtacata |
9315456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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