View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_high_2 (Length: 773)
Name: NF11922_high_2
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 682; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 7 - 758
Target Start/End: Original strand, 36998751 - 36999504
Alignment:
| Q |
7 |
ccagtgggatgtccataattcccagtggtagagtatgtggcggtccccgttccagtcgtccctgtggtgtnnnnnnnctgacccatatgcccagccgcag |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36998751 |
ccagtgggatgtccataattcccagtggtagagtatgtggcggtccccgttccagtcgtccctgtggtgtggtggggctgacccatatgcccagccgcag |
36998850 |
T |
|
| Q |
107 |
cagtggtcgtctggttgaccgccgcattgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctcttttttatgggttgccatctc |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36998851 |
cagtggtcgtctgtttgaccgccgcattgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctctttcttatgggttgccatctc |
36998950 |
T |
|
| Q |
207 |
tttttgcacaggatcacgtgctgtcatcttctcagtctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998951 |
tttttgcacaggatcacgtgctgtcatcttctcagtctggagataaattagttcaacacatgttaggaacaaacaacacaaatgtgacccataactagca |
36999050 |
T |
|
| Q |
307 |
cattgaaagaagaaaaaagagttcttcaaaagtatactatttttcctggaattataatgatttttaataccaacattttacattgaaatgcgaaggtgtg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999051 |
cattgaaagaagaaaaaagagttcttcaaaagtatactatttttcctggaattataatgatttttaataccaacattttacattgaaatgcgaaggtgtg |
36999150 |
T |
|
| Q |
407 |
acatatttgctagctcacacaacattaaaaactatccttaactaagaggtaattttatggttaattttgattgaaataatgttgcacctaaaatgtacct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36999151 |
acatatttgctagctcacacaacattaaaaactatccttaactaagaggtaattttatggttaattttgattgaaataatgttgcacctaaaatgtacct |
36999250 |
T |
|
| Q |
507 |
aaaaaataataataatcaggcatataccatgattaattacatttgatt--nnnnnnnntcattttatgtgtaactgaatttgtttaggaacatctcttac |
604 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36999251 |
aaaaaataataataatcaggcatataccatgattaattacatttgattaaaaaaaaaatcattttatgtgtaactgaatttgtttaggaacatatcttac |
36999350 |
T |
|
| Q |
605 |
aaaaaattaacaatttatttagaaaagaaaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggc |
704 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999351 |
aaaaaattaacaatttattcagaaaagaaaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggc |
36999450 |
T |
|
| Q |
705 |
cttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttc |
758 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36999451 |
cttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttc |
36999504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 672 - 755
Target Start/End: Original strand, 36989119 - 36989203
Alignment:
| Q |
672 |
aaattaaaggaat-accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgt |
755 |
Q |
| |
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|||| |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
36989119 |
aaatgaaaggaattaccttctcctgaagagtggccttggtcttttccatgccagatttggctgaagcaccaatgttggcagctgt |
36989203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 672 - 755
Target Start/End: Original strand, 36994860 - 36994944
Alignment:
| Q |
672 |
aaattaaaggaat-accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgt |
755 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
36994860 |
aaatgaaaggaattaccttctcttgaaatgtggccttggttttttccatgccagatttggctgaagcaccaatgttggcagctgt |
36994944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 36994070 - 36994182
Alignment:
| Q |
133 |
ttgtgttcacgtgctgccagcttatctagctctgcctggttcatctttgcctcttttttatgggttgccatctctttttgcacaggatcacgtgctgtca |
232 |
Q |
| |
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||||||||||| || ||| ||||| ||||| |||||||| | | || | ||||| || |||||||||||||||||||||| ||||||| |||| |||| |
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| T |
36994070 |
ttgtgttcacgcgccgcctctttatcaagctcagcctggttaaccctttcttctttcttttgggttgccatctctttttgcaaaggatcatgtgccgtca |
36994169 |
T |
|
| Q |
233 |
tcttctcagtctg |
245 |
Q |
| |
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||||||| ||||| |
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| T |
36994170 |
tcttctctgtctg |
36994182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 36988346 - 36988407
Alignment:
| Q |
184 |
tcttttttatgggttgccatctctttttgcacaggatcacgtgctgtcatcttctcagtctg |
245 |
Q |
| |
|
||||| || |||||||||||||| ||||||| ||||||| |||| ||||||||||| ||||| |
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|
| T |
36988346 |
tctttcttttgggttgccatctccttttgcaaaggatcatgtgccgtcatcttctctgtctg |
36988407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 685 - 758
Target Start/End: Original strand, 22953883 - 22953956
Alignment:
| Q |
685 |
accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttc |
758 |
Q |
| |
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||||| ||||| | |||||| ||||||||||||| ||||| |||||||| |||||||||||||| |||||||| |
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| T |
22953883 |
accttttcttggacggtggctttggtcttctccaagccagacttggcagatgcaccaatgttggctgctgtttc |
22953956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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