View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_high_3 (Length: 639)
Name: NF11922_high_3
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 249 - 622
Target Start/End: Complemental strand, 37168215 - 37167842
Alignment:
| Q |
249 |
aaagaaaacactgaccaatattcccgctattttgataggccgacaataggacaaaatatgttacattagacaggaactcaaccttgatttacaataaact |
348 |
Q |
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| T |
37168215 |
aaagaaaacactgaccaatattcccgctattttgataggccgacaataggacaaaatatgttacattagacaggaactcaaccttgatttacaataaact |
37168116 |
T |
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| Q |
349 |
acgatctgctgaagaccactgtgacatcatgctaccaacttaaaacaataaactagataacaaaagcagcatcttaatttctttcatgttctttacgtat |
448 |
Q |
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| T |
37168115 |
acgatctgctgaagaccactgtgacatcatgctaccaacttaaaacaataaactagataacaaaagcagcatcttaatttctttcatgttctttacgtat |
37168016 |
T |
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| Q |
449 |
ttagattagattataagttaatttaatacatgaaacaataatgaaaattcatcaataaaaacaattaattaacgtaacaactgcatcaagacaacacata |
548 |
Q |
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| T |
37168015 |
ttagattagattataagttaatttaatacatgaaacaataatgaaaattcatcaataaaaacaattaattaacgtaacaactgcatcaagacaacacata |
37167916 |
T |
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| Q |
549 |
tatnnnnnnnttcatgtgggaatctcagttcctcctcctcggtaccataataatacaatgtccacgccgtatgt |
622 |
Q |
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| T |
37167915 |
tataaaaaaattcatgtgggaatctcagttcctcctcctcggtaccataataatacaatgtccacgccgtatgt |
37167842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 37168481 - 37168371
Alignment:
| Q |
9 |
aatgagaagaacttatgatcacatgattagccttttgctcgatggtgtagtagtatttaggactccaaagtgttgagcgtagttttttggttagtccaga |
108 |
Q |
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| T |
37168481 |
aatgagaagaacttatgatcacaagattagccttttgctcgatggtgtagtagtatttaggactccaaagtgttgagcatagttttttggttagtccaga |
37168382 |
T |
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| Q |
109 |
acaatccttag |
119 |
Q |
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| T |
37168381 |
acaatccttag |
37168371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 37168325 - 37168235
Alignment:
| Q |
165 |
aggagtataagcattaagcaacgttttgtttggttcataatcctt-agtttacaaagtagaactataatgagaggacaatattccaaagaa |
254 |
Q |
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| T |
37168325 |
aggagtataagcattaagcaacgtattgtttggttcataatcctttagtttacaaagtagaactataatgagaggacaatattccaaagaa |
37168235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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