View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_high_5 (Length: 456)
Name: NF11922_high_5
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 39238059 - 39237627
Alignment:
| Q |
18 |
cttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgttttgtcatgggtacttt |
117 |
Q |
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| T |
39238059 |
cttgctaggatccttgcagagctaaaactgatcaacacagagttgggcagggttgctctttcatctgcactcattaatgatgttttgtcatgggtacttt |
39237960 |
T |
|
| Q |
118 |
tggccatagcaattgctatggcagagaatgaaagagttactttggcttctataatggttgtgttgtcaagtgcagcatttgttgcttttaatgtttttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39237959 |
tggccatagcaattgctatggcagagaatgaaagagttactttggcttctataatggttgtgttgtcaagtgcagcatttgttgcttttaatgtttttgt |
39237860 |
T |
|
| Q |
218 |
tgtaagaccaataatcatgtggataataaggaaaacaccagaaggcgaaacgtttagcgatttctatatttgtttgatactagcaggtgtgatgatatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39237859 |
tgtaagaccaataatcatgtggataataaggaaaacaccagaaggcgaaacgtttagcgatttctatatttgtttgatactagcaggtgtgatgatatct |
39237760 |
T |
|
| Q |
318 |
ggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39237759 |
ggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaa |
39237660 |
T |
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| Q |
418 |
agcttgaggactttgtttctggacctttgcttc |
450 |
Q |
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| T |
39237659 |
agcttgaggactttgtttctggacttttgcttc |
39237627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 318 - 446
Target Start/End: Complemental strand, 44055887 - 44055759
Alignment:
| Q |
318 |
ggtttcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaa |
417 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||| | |||||| |||||| || |||| | |||| |
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| T |
44055887 |
ggtttcatcactgatgctattggaactcattctgttttcggagcttttgtgttcggtttggcaattccgaatggaccgcttggtgtttctctggtagaaa |
44055788 |
T |
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| Q |
418 |
agcttgaggactttgtttctggacctttg |
446 |
Q |
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|||||||||| |||||||| |||| |||| |
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| T |
44055787 |
agcttgaggattttgtttcaggacttttg |
44055759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 436
Target Start/End: Original strand, 2811619 - 2811733
Alignment:
| Q |
322 |
tcatcacagatgctattggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagct |
421 |
Q |
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|||| ||||||| ||||||||| |||||| ||||||| |||||||| | ||| || | ||||||| |||||||||||| ||| | ||||||||||| |
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| T |
2811619 |
tcattacagatgttattggaacacattctatttttggtgcttttgtttatggattagtgattccaaatggaccacttggagctgcaataattgaaaagct |
2811718 |
T |
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| Q |
422 |
tgaggactttgtttc |
436 |
Q |
| |
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|| ||||||||||| |
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| T |
2811719 |
agaagactttgtttc |
2811733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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