View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_high_8 (Length: 389)
Name: NF11922_high_8
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 52238897 - 52239285
Alignment:
| Q |
1 |
tgtacttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaactggaaataaaatatgg |
100 |
Q |
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| T |
52238897 |
tgtacttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacatgctttattgttgttaacaggaaataaaatatgg |
52238996 |
T |
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| Q |
101 |
aattttcaatcaaatgggttaagaatagtaagtactagacgannnnnnnnnnnnnnnnntattcttacgtattgtaatgttgacaacagtgagcgtatat |
200 |
Q |
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| T |
52238997 |
aattttcaatcaaatgggttaagaatagtaagtactagacgaacacacagacacacacatattcttacgtattgtaatgttgacaacagtgagcgtatat |
52239096 |
T |
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| Q |
201 |
ttccttcctttcctttagaccattgttgtatcttcttgtcaatgacctatatcgtgtacagaaatatatgctcaatatcgttattcttctacaagttgat |
300 |
Q |
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| T |
52239097 |
ttccttcctttcctttagaccattgttgtatcttcttgtcaatgacctatatcgtgtacagaaatatatgctcaatatcgttattcttctacaagttgat |
52239196 |
T |
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| Q |
301 |
aaaaatgaaacatgtgtaggtaagttgcaaattacttggagttcttgaatttcttggttctgtgagacatcaccctcatcttgggataa |
389 |
Q |
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| T |
52239197 |
aaaaatgaaacatgtgtaggtaagttgcaaattacttggagttcttgaatttcttggttctgtgagacgtcaccctcatcttgggataa |
52239285 |
T |
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