View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_high_9 (Length: 374)
Name: NF11922_high_9
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 82 - 353
Target Start/End: Original strand, 7526426 - 7526696
Alignment:
| Q |
82 |
aaacaaattaaataacatattcgcaccttttttaaaacaatggatcaacatgaacgttgaaataaagataaatacttaaaatgtgtttaaacnnnnnnnn |
181 |
Q |
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| T |
7526426 |
aaacaaattaaataacatatttgcaccttttttaaaacaatggatcaacatgaactcttaaataaagataaatacctaaaatgtgtttaagcttttttat |
7526525 |
T |
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| Q |
182 |
nnnnnnncttctggtcttaagtgaacataacatagtaatcaagagttcagtcgtgagttaaatgcagcttgatcgacaattattttatacattaattgaa |
281 |
Q |
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| T |
7526526 |
tttttccct-ctagtcttaagtgaacataatatagtaatcaggagttcagtcgtaagttaaatgcagcttgattgacaattattttatacattaattgaa |
7526624 |
T |
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| Q |
282 |
ttcgaattcttctttatcttttaataaagnnnnnnngaagaagctaaattagtatatccaaattgacatcga |
353 |
Q |
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| T |
7526625 |
ttcgaattcttctttatcttttaataaagtttttttgaagaagttaaattagtatactcaaattgacatcga |
7526696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7526312 - 7526408
Alignment:
| Q |
1 |
gaagaagacattgatttgcatgctacctatatgacaatgttgctaaccttatggattaaaaggactaatgtggtgtcgattaaacaaattaaataac |
97 |
Q |
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| T |
7526312 |
gaagaagacgttgatttgcatgctacctatacgacaatgttgctaaccttgtggattaaaaggactaatgtggtgtcaattaaacaaattaaataac |
7526408 |
T |
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