View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11922_low_1 (Length: 816)

Name: NF11922_low_1
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11922_low_1
NF11922_low_1
[»] chr1 (10 HSPs)
chr1 (1-611)||(2568930-2569543)
chr1 (683-799)||(2569616-2569731)
chr1 (111-283)||(29119324-29119495)
chr1 (111-281)||(32676136-32676305)
chr1 (111-260)||(8462129-8462276)
chr1 (111-208)||(8809715-8809811)
chr1 (111-205)||(25161309-25161402)
chr1 (192-283)||(46435465-46435556)
chr1 (111-172)||(46435563-46435624)
chr1 (112-145)||(16679835-16679868)
[»] chr7 (7 HSPs)
chr7 (111-268)||(35341536-35341692)
chr7 (111-283)||(48250154-48250327)
chr7 (135-283)||(32694570-32694717)
chr7 (110-283)||(31306868-31307046)
chr7 (216-283)||(48072491-48072558)
chr7 (216-267)||(40856949-40857000)
chr7 (29-62)||(35923474-35923507)
[»] chr5 (14 HSPs)
chr5 (116-283)||(33858538-33858704)
chr5 (111-283)||(11607534-11607705)
chr5 (111-283)||(19357262-19357432)
chr5 (127-283)||(33271630-33271785)
chr5 (111-279)||(1826259-1826426)
chr5 (111-208)||(38010689-38010785)
chr5 (111-247)||(39570079-39570214)
chr5 (111-208)||(13015381-13015477)
chr5 (111-208)||(29989962-29990058)
chr5 (111-182)||(13086753-13086824)
chr5 (111-208)||(9827788-9827884)
chr5 (111-208)||(13478120-13478216)
chr5 (166-260)||(42148201-42148294)
chr5 (28-67)||(24231710-24231749)
[»] chr2 (13 HSPs)
chr2 (111-283)||(34392081-34392252)
chr2 (125-283)||(23863803-23863958)
chr2 (114-267)||(7381695-7381846)
chr2 (111-283)||(37357917-37358092)
chr2 (161-279)||(4779635-4779752)
chr2 (111-208)||(21603959-21604055)
chr2 (111-276)||(4775634-4775799)
chr2 (222-283)||(21606149-21606210)
chr2 (162-283)||(25275622-25275741)
chr2 (112-159)||(34904304-34904351)
chr2 (29-75)||(35022712-35022757)
chr2 (29-62)||(13811144-13811177)
chr2 (35-64)||(42924384-42924413)
[»] chr3 (20 HSPs)
chr3 (124-283)||(37742738-37742896)
chr3 (111-279)||(44380254-44380421)
chr3 (115-286)||(33509684-33509854)
chr3 (111-258)||(47426350-47426496)
chr3 (112-208)||(50934501-50934596)
chr3 (111-208)||(47186175-47186271)
chr3 (113-179)||(32319468-32319534)
chr3 (111-208)||(31187145-31187241)
chr3 (111-177)||(10179868-10179934)
chr3 (111-208)||(42664673-42664769)
chr3 (119-281)||(35094554-35094717)
chr3 (111-177)||(10018671-10018737)
chr3 (111-208)||(34029366-34029462)
chr3 (113-182)||(39498769-39498838)
chr3 (111-177)||(10123211-10123277)
chr3 (231-283)||(19619217-19619269)
chr3 (29-59)||(48180273-48180303)
chr3 (134-276)||(17466296-17466437)
chr3 (29-62)||(30082964-30082997)
chr3 (29-74)||(48322163-48322207)
[»] chr4 (18 HSPs)
chr4 (111-283)||(12473704-12473875)
chr4 (111-283)||(12528113-12528284)
chr4 (111-279)||(35869575-35869742)
chr4 (111-279)||(51811914-51812081)
chr4 (111-268)||(21260794-21260950)
chr4 (111-275)||(22343337-22343500)
chr4 (112-263)||(33249394-33249544)
chr4 (111-283)||(55590482-55590642)
chr4 (112-206)||(52910126-52910219)
chr4 (111-208)||(52012778-52012874)
chr4 (112-183)||(34829182-34829253)
chr4 (115-170)||(49998486-49998541)
chr4 (111-208)||(9799438-9799534)
chr4 (112-208)||(49999663-49999758)
chr4 (216-279)||(1796654-1796717)
chr4 (224-279)||(35781021-35781076)
chr4 (35-70)||(40252766-40252801)
chr4 (29-62)||(32692920-32692953)
[»] chr8 (9 HSPs)
chr8 (111-279)||(41179567-41179734)
chr8 (111-283)||(24337830-24338001)
chr8 (111-283)||(11254028-11254198)
chr8 (119-257)||(4708333-4708470)
chr8 (118-208)||(18168392-18168481)
chr8 (118-208)||(18631949-18632038)
chr8 (111-208)||(1514803-1514899)
chr8 (30-65)||(12954835-12954870)
chr8 (29-68)||(24733277-24733316)
[»] chr6 (9 HSPs)
chr6 (112-279)||(1211848-1212014)
chr6 (111-283)||(5403876-5404047)
chr6 (111-283)||(32644838-32645007)
chr6 (111-176)||(11753167-11753232)
chr6 (111-208)||(34245567-34245663)
chr6 (239-283)||(10503259-10503303)
chr6 (29-62)||(7465582-7465615)
chr6 (112-183)||(11113557-11113628)
chr6 (29-59)||(2424394-2424424)
[»] scaffold0519 (1 HSPs)
scaffold0519 (111-283)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (112-283)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (111-283)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (112-208)||(23174-23263)
[»] scaffold1444 (1 HSPs)
scaffold1444 (29-65)||(881-917)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 2568930 - 2569543
Alignment:
Q  1 tggagtagtttttgcaacataagcgtggttaaagagtgtcccggagacactcgttaacattttccttattttaataacatttttgagcatgttgtagatg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  2568930 tggagtagtttttgcaacataagtgtggttaaagagtgtcccggaggcactcgttaacatttcccttattttaataacatttttgagcatgttgtagat- 2569028  T
Q  101 attattaagcccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttat 200  Q
      |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  2569029 --tattgagcccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaa-tgctttat 2569125  T
Q  201 ttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttgtcagcgtactttgg 300  Q
    ||||||||       ||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  2569126 ttgatatatttttt-aaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatccgtcagcgtactttgg 2569224  T
Q  301 atgttggaac----------gtctttgcatgctcttgcttgactcatnnnnnnnntaatattggtatttatataaaaaaggcaaaagagaaaccaattaa 390  Q
    ||||||||||          |||||||||||||||||||| ||||||         |||| ||||||||||| |||||||||||||||||||||||||||    
T  2569225 atgttggaacttaatttgatgtctttgcatgctcttgcttcactcataaaaaaaaaaatagtggtatttatagaaaaaaggcaaaagagaaaccaattaa 2569324  T
Q  391 taattagataagagaacaaaaatcacact--ggtttccaattatattacatgatgttatcataaaggaatctcctagagagtttctttaaaataaaaaat 488  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2569325 taattagataagagaacaaaaatcacactatggtttccaattatattacatgatgttatcataaaggaatctcctagagagtttctttaaaagaaaaaat 2569424  T
Q  489 ctccttgagagttggtcactataattaacttttacaatttattgtactaatttgaattcactcttttatatttgtgcatatttcttaacaaactccaaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||    
T  2569425 ctccttgagagttggtcactataattaacttttacaatttattgtactaatt---attcactcttttatatttgtgcat-tttcttaacaaactccaaaa 2569520  T
Q  589 agacataatgaatatttgcactg 611  Q
    |||||||||||||||||||||||    
T  2569521 agacataatgaatatttgcactg 2569543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 683 - 799
Target Start/End: Original strand, 2569616 - 2569731
Alignment:
Q  683 aaattcgaacccattctgcatacccatttttagcgttccannnnnnngttgttgcacattttgtgctataattttttccgacgtattataggtggatgtg 782  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  2569616 aaattcgaacccattctgcatacccatttttagcgttccatttctttgttgttgcacattttgtgctataatttt-tccgacgtattataggtggatatg 2569714  T
Q  783 tttataaacgaggttat 799  Q
    |||||||||||||||||    
T  2569715 tttataaacgaggttat 2569731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||| || |||||| |||  | |||||||||||||||||      
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttacttta-tagatgctttatttgatatatt 29119397  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||||||  || |||||||||||||| |||| ||||||| | ||||| ||||||| ||||||    
T  29119396 tttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 111 - 281
Target Start/End: Original strand, 32676136 - 32676305
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| | ||  ||||||||||||||||| |||  |||||||||||||||||||      
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttacttta-taaatgctttatttgatatatt 32676234  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 281  Q
         ||||  |||||||  || |||| |||||||||||||||||||||| ||||||  ||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 8462129 - 8462276
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||  ||||| ||||||||| |||||||||||   |||||| ||||||||||||||||||||||  |||  ||||| ||||||| |||||      
T  8462129 ccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttatttta-taaatgttttatttaatatact 8462226  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 260  Q
         |||||| |||||| |||||||||| ||||||||||||||||||||    
T  8462227 tttttaaagggcgtgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttacttta-taaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgat 205  Q
    |||||||||||||||||| ||  ||||| |||||| ||||  ||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttacttta-taaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 46435556 - 46435465
Alignment:
Q  192 atgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    |||||||||||||||||       |||||||||| ||  ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435556 atgctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 46435624 - 46435563
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacct 172  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||||| |||| | |||||    
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct 46435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatata 145  Q
    ||||||||||||||||||||||||||| ||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 7e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 35341536 - 35341692
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||      
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttacttta-taaatgttttatttgatatact 35341634  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 268  Q
         ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 48250154 - 48250327
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||  | ||||||||||||||||       
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatttt 48250252  T
Q  211 nnnnnaaagggtgtgc--catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         ||||||| |||  |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250253 tttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 32694717 - 32694570
Alignment:
Q  135 aatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgac 234  Q
    ||||||||||| |||| |  ||||| ||||| ||| ||| ||||||||| |||  |||| ||||||||||||||       ||||||||||||| |||||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttat-aaattctttatttgatatatttttttaaagggtgtgccacgtgac 32694619  T
Q  235 acattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694618 acattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 31307046 - 31306868
Alignment:
Q  110 cccacttgtgtaccattaaggtaccaatgatatatatcatttgccaa-ttacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||| |||||||||||||| ||| |||||||||||||||||  |||| ||| ||||||| ||||||||||||||| |||  ||||||||||||||||  |    
T  31307046 cccatttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttacttta-taaatgctttatttgatgaa 31306948  T
Q  209 nnnnnnnaa-----agggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
           ||     ||| |||| ||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306947 aataaataaattataggatgtgtcatgtggtacattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 48072491 - 48072558
Alignment:
Q  216 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072491 aaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  216 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 267  Q
    |||||||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 35923507 - 35923474
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattt 62  Q
    ||||||||||| ||||||||||||||||||||||    
T  35923507 ttaaagagtgttccggagacactcgttaacattt 35923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 33858704 - 33858538
Alignment:
Q  116 tgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnn 215  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||           
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttat-aaatgttttatttgatatactttttt 33858606  T
Q  216 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858605 aaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 11607705 - 11607534
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||| |||| |||  ||||| |||||||||||||      
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttat-aaatgttttatttgatatact 11607607  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         ||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607606 tttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 19357432 - 19357262
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacttta-taaatgctttatttgatata-t 19357335  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         ||||| ||| ||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 33271630 - 33271785
Alignment:
Q  127 aaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgc 226  Q
    |||||||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||   |||||||||||||||||||       ||||| || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttac-ttgataaatgctttatttgatatatttttttaaaggatgcgc 33271728  T
Q  227 catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    || ||| |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 1826259 - 1826426
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||| ||||||||||| |||| ||   | |||||||||||||||||      
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattac-tttgtagatgctttatttgatatatt 1826357  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
         ||||  |||||||  || |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826358 tttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 38010785 - 38010689
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 39570214 - 39570079
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||| |||||| ||| ||||| |||||| |||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatact 39570116  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattgg 247  Q
         |||||||||||||  ||||| |||||||||||    
T  39570115 tttttaaagggtgtgccacctgacatattctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||| ||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 13086753 - 13086824
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 182  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 9827788 - 9827884
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| | || | |||||| ||||| |||||||||||| |||| |||  ||||  |||||||||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattacttta-taaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||| ||||||| |||||| ||||  ||||| | |||||||||| ||||| |||||| |||  ||||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttacttta-taaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 42148201 - 42148294
Alignment:
Q  166 gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 260  Q
    |||||||||||||||||| |||  ||||| |||||||||||||       ||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  42148201 gccacctaccaatgttactttat-aaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatata 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 24231749 - 24231710
Alignment:
Q  28 gttaaagagtgtcccggagacactcgttaacattttcctt 67  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  24231749 gttaaagagtgttccggaggcactcgttaacattttcctt 24231710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 34392252 - 34392081
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttacttta-taaatgctttatttgatatatt 34392154  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||||||  || |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 23863958 - 23863803
Alignment:
Q  125 ttaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgt 224  Q
    |||||||||||||| |||||   ||| | |||||| ||||||||||||||||||||||| |||  |||||||||||||||||||       |||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttat-aaatgctttatttgatatatatttttaaagggtgt 23863862  T
Q  225 gccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||  || |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863861 gccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 7381695 - 7381846
Alignment:
Q  114 cttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnn 213  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||| ||||||||| ||||||||||||| |||  |||| ||||||||||||||         
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttacttta-taaattctttatttgatata-tttt 7381792  T
Q  214 nnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 267  Q
      ||||| |||| ||||||||||||| ||||||| |||| ||||||| ||||||    
T  7381793 ttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattat 7381846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 37358092 - 37357917
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||| ||||||||||||||||||||||| ||||  | ||||| |||||| |||||| ||||||||| |||  ||||||||||||| ||||       
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttat-aaatgctttatttaatatttt 37357994  T
Q  211 nnnnn----aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
             |||   ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357993 tttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 4779635 - 4779752
Alignment:
Q  161 agtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 260  Q
    |||||||| |||| ||||||||| |||  |||| ||||||||||||||       ||||| |||| || |||||||||||||||||||||||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttat-aaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  261 tcattatgttacacaagtg 279  Q
     ||||||| ||||||||||    
T  4779734 ccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||  |||||||||||||||| |||  ||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttacttta-taaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 111 - 276
Target Start/End: Original strand, 4775634 - 4775799
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||||| | |||  || |||||||| |||| |||  || || ||||||| |||||      
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatt 4775733  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaa 276  Q
         ||||| |||||||  || |||| | |||||||||||||||||||| ||||||| |||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 21606149 - 21606210
Alignment:
Q  222 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 25275741 - 25275622
Alignment:
Q  162 gtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatat 261  Q
    |||||||||||| ||||||||| ||   |||| ||||||||||||||       ||||| ||||||| |||| ||||||||||||||||||| ||||||     
T  25275741 gtgtgccacctatcaatgttactttt--aaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  262 cattatgttacacaagtgctat 283  Q
    ||||||| |||| |||||||||    
T  25275643 cattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 34904351 - 34904304
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaatta 159  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  34904351 cacttttgtatcattaaggtaccaatgttatatatcatttgctaatta 34904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 35022712 - 35022757
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattttccttattttaat 75  Q
    |||||||||| || || ||||||||||||||||||||||||||||||    
T  35022712 ttaaagagtgccctgg-gacactcgttaacattttccttattttaat 35022757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 13811144 - 13811177
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattt 62  Q
    ||||||||||||||||||||||| ||||||||||    
T  13811144 ttaaagagtgtcccggagacactggttaacattt 13811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 42924413 - 42924384
Alignment:
Q  35 agtgtcccggagacactcgttaacattttc 64  Q
    ||||||||||||||||||||||||||||||    
T  42924413 agtgtcccggagacactcgttaacattttc 42924384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 37742738 - 37742896
Alignment:
Q  124 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtg 223  Q
    ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||       |||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattacc-aatgctttatttgatatatttttttaaagagtg 37742836  T
Q  224 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 44380254 - 44380421
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| |||||| |||| |||| |||  |||||||||||||||||||      
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttat-aaatgctttatttgatatact 44380352  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
         ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 115 - 286
Target Start/End: Original strand, 33509684 - 33509854
Alignment:
Q  115 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnn 214  Q
    ||||||||||||||||||| |||  |||||||||||  ||||||| |||||||||||||||||| |||| |||  | |||||||||||||| ||          
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattacttta-tagatgctttatttgatgtatttttt 33509782  T
Q  215 naaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 286  Q
     ||||| |||||||  || |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509783 taaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||  |||||| |||| |||||||| |||||| |||||| ||||||||| |||  | |||||||||||||||||      
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttacttta-tagatgctttatttgatatatt 47426448  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtata 258  Q
         |||||||||||||  ||  ||||||||||||| ||||||||||    
T  47426449 tttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||||| |||  |||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttacttta-taaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 47186175 - 47186271
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  113 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatg 179  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||| ||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 10179934 - 10179868
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 177  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||||||||||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||| | |||||| ||||  ||||| | |||||||||| |||||||||||  |||  ||||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttatttta-taaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 281
Target Start/End: Original strand, 35094554 - 35094717
Alignment:
Q  119 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgt--gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnna 216  Q
    |||||||||| |||||| || |||||| ||||  | ||||| || ||  |||||||||||||||||| |||  ||||  |||||||||||||       |    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttat-aaatattttatttgatatattttttta 35094652  T
Q  217 aagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 281  Q
    |||| |||| || |||||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  35094653 aaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 177  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||| | |||||||||||||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||| ||||||||||||||||||| |||||| ||||   |||| | |||||||||| ||| |||||||| |||  ||||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttacttta-taaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 39498838 - 39498769
Alignment:
Q  113 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 182  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| |||||| | ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgtta 39498769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 10123277 - 10123211
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 177  Q
    |||||||||||||||||| ||| ||||| ||||||||| | | |||| | |||||||||||||||||    
T  10123277 ccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  231 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 48180273 - 48180303
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaaca 59  Q
    |||||||||||||||||||||||||||||||    
T  48180273 ttaaagagtgtcccggagacactcgttaaca 48180303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 17466296 - 17466437
Alignment:
Q  134 caatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtga 233  Q
    ||||| ||||||||||| | |||||| |||||| |||||| ||||||||| |||  ||||| |||| ||||||||       ||||||| ||||| ||      
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttacttta-taaatgatttagttgatatatttttttaaagggtatgccacgtac 17466394  T
Q  234 cacattctaattggacaatggtatatatcattatgttacacaa 276  Q
    |||| ||||| ||  |||||||||||| ||||| | |||||||    
T  17466395 cacaatctaactgagcaatggtatataccattacggtacacaa 17466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 30082964 - 30082997
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattt 62  Q
    ||||||||||||||| ||||||||||||||||||    
T  30082964 ttaaagagtgtcccgaagacactcgttaacattt 30082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 48322207 - 48322163
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattttccttattttaa 74  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  48322207 ttaaagagtgccccggag-cactcgttaacattttccttagtttaa 48322163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 12473704 - 12473875
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12473802  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473803 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 12528113 - 12528284
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12528211  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528212 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| | |||||||||||||||||||||  ||  ||||| |||||||||||||      
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactata-taaatgttttatttgatatact 35869644  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
         ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 51811914 - 51812081
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||| |||||||||||||||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| |||  ||||  ||| |||||||||      
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttat-aaattttttttttgatatatt 51812012  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
         ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812013 tttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 21260794 - 21260950
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatt 21260892  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 268  Q
         |||||||||||||  || ||||||||||||||  |||| |||||| |||||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 111 - 275
Target Start/End: Original strand, 22343337 - 22343500
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||| |||||| || ||| ||||||||| |||  |||||||||||||||||||      
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttacttta-taaatgctttatttgatatatt 22343435  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacaca 275  Q
         ||||| |||||||  |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 33249544 - 33249394
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 211  Q
    |||||||||||||||||||||| |||| ||||||  ||| |||||||| |||||| |||||||||||||||| |||  |||||||||||||||||||       
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttacttta-taaatgctttatttgatatatat 33249446  T
Q  212 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatca 263  Q
        |||||||||||||  || |||| ||||||||  ||||| |||||||||    
T  33249445 ttttaaagggtgtgccacatggcacaatctaattgagcaatgatatatatca 33249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 55590482 - 55590642
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||| |||||| |||||||||||||||            ||||||||||||||      
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta------------ctttatttgatatact 55590569  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         ||||| ||||||| |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590570 tttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgata 206  Q
    |||||||||||||| | |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattacttta-taaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttacttta-taaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 34829253 - 34829182
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 183  Q
    ||||| ||||| ||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttac 34829182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  115 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 170  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||  | | |||||||| |||||||||||| |||  ||||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttacttta-taaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||| ||| ||| |||| ||| | ||||| | |||||| |||||| ||| |||||||||||  |||  |||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttatttta-taaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 1796654 - 1796717
Alignment:
Q  216 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
    ||||| |||| || ||| |||| | |||||||||||||||||||| ||||||| ||||||||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtg 1796717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 35781021 - 35781076
Alignment:
Q  224 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 40252766 - 40252801
Alignment:
Q  35 agtgtcccggagacactcgttaacattttccttatt 70  Q
    |||| |||||||||||||||||||||||||||||||    
T  40252766 agtgccccggagacactcgttaacattttccttatt 40252801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 32692953 - 32692920
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattt 62  Q
    |||||||||||||||||| |||||||||||||||    
T  32692953 ttaaagagtgtcccggaggcactcgttaacattt 32692920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||| |||  ||||| ||||||| |||||      
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttacttta-taaatgttttatttaatatatt 41179636  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
         || || |||||||  || |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 24338001 - 24337830
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||| ||||||||| ||||| |||||| |||  | |||||| ||||||||| ||||||||||||| |||  | |||||||||||||||||      
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttat-agatgctttatttgatatata 24337903  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||||||  |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337902 tttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 11254198 - 11254028
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11254101  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 4708470 - 4708333
Alignment:
Q  119 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaa 218  Q
    |||||| |||||||||||||  |||||||||  |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       |||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatatttttaaa 4708372  T
Q  219 gggtgtgccatgtgacacattctaattggacaatggtat 257  Q
    |||||||||| ||| |||||||||||| | |||||||||    
T  4708371 gggtgtgccacgtggcacattctaattaggcaatggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  118 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  118 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    |||||||||||||||||||||||||||| |||||| ||||   |||| | ||||| |||| |||||||||||| |||  ||||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttacttta-taaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 12954835 - 12954870
Alignment:
Q  30 taaagagtgtcccggagacactcgttaacattttcc 65  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12954835 taaagagtgtctcggagacactcgttaacattttcc 12954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 24733277 - 24733316
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattttcctta 68  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  24733277 ttaaagagtgccccggagacactcgttaacatttccctta 24733316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 1212014 - 1211848
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 211  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| | | ||||||||||||||||       
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcga-tgctttatttgatatattt 1211916  T
Q  212 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 279  Q
        ||||||||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 5404047 - 5403876
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||||||||||||||| |||| ||||||| ||| | || ||| ||| ||||||||||||||||||| |||  | ||| |||||||||||||      
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttat-agatgttttatttgatatatt 5403949  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||| ||  ||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403948 tttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 111 - 283
Target Start/End: Complemental strand, 32645007 - 32644838
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||| |||||||||||||| || | ||  ||||||||||| ||||||||  ||||| ||||||| |||||||| |||  |||| ||||||||| ||||      
T  32645007 ccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta--aaatactttatttgttatatt 32644910  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||||||  ||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644909 tttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacca 176  Q
    |||||||||||||||||||||||||||| |||||| |||  |||||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    ||||||||||||||||||||||  |||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttacttta-taaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  239 tctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 7465582 - 7465615
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattt 62  Q
    ||||||||||||||||||||||||||||||||||    
T  7465582 ttaaagagtgtcccggagacactcgttaacattt 7465615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 11113557 - 11113628
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 183  Q
    ||||||||||||||||||||||||||| |||||| ||||  | ||| | |||||| ||| ||| ||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttac 11113628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 2424394 - 2424424
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaaca 59  Q
    |||||||||||||||||||||||||||||||    
T  2424394 ttaaagagtgtcccggagacactcgttaaca 2424424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 11195 - 11365
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11292  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

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Target: scaffold0229 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 13176 - 13005
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 211  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| |  |||||||||||||||||       
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatc-gatgctttatttgatatattt 13078  T
Q  212 nnnnaaaggg-tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
        |||||| ||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

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Target: scaffold0032 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 111 - 283
Target Start/End: Original strand, 34194 - 34363
Alignment:
Q  111 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 210  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||| |||| |||  ||||  |||||||||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattacttta-taaatattttatttgatata-t 34291  T
Q  211 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 283  Q
         |||||||||| || ||||||||||||||||||| |||| |||||| | ||||| ||||||| ||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata-ccttatggtacacaaatgctat 34363  T

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Target: scaffold0263 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 23263 - 23174
Alignment:
Q  112 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 208  Q
    ||||||||||||||||||||||       |||||||||| |||||||| |||||||||||||||||| |||| |||  ||||  |||||||||||||    
T  23263 cacttgtgtaccattaaggtac------gatatatcattggccaattagagtgtgccacctaccaattttacttta-taaatattttatttgatata 23174  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 917 - 881
Alignment:
Q  29 ttaaagagtgtcccggagacactcgttaacattttcc 65  Q
    |||||||||| ||||||||||||||||||||||||||    
T  917 ttaaagagtgccccggagacactcgttaacattttcc 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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