View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_low_10 (Length: 336)
Name: NF11922_low_10
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 32275352 - 32275215
Alignment:
| Q |
18 |
gtaaacaggtagtgaatctatctctgcattttattcatcacttgctcttgctttctcttcttaacttgctatatgtaaaattttctcttctctttattgc |
117 |
Q |
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| T |
32275352 |
gtaaacaggtagtgaatctatctctgcattttattcatcacttgctcttgctttctcttcttaacttgctatatgtaaaattttctcttctctttattgc |
32275253 |
T |
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| Q |
118 |
atacatttcttt---ccctatcttttccttgataaatt |
152 |
Q |
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| T |
32275252 |
atacattttttttcaccctatcttttccttaataaatt |
32275215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 32269044 - 32268829
Alignment:
| Q |
18 |
gtaaacaggtagtgaatctatctctgcattttattcatcacttgctcttgctttctcttcttaacttgctatatgtaaaattttct--cttctctttatt |
115 |
Q |
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| T |
32269044 |
gtaaacaggtagtgaatctatttatgcattttgttcatcacttgctcttgctttctcttattaacttgctatatg----gttttctagctcctctttatt |
32268949 |
T |
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| Q |
116 |
gcatacatttcttt--ccctatcttttccttgataaattccagttttaggttaaatgttgtttcagcattttgctgactaacactaaactgaaacttaat |
213 |
Q |
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| T |
32268948 |
gcatacatttttttcaccctatcttttccttgataaactttagat---gaaataatgatgttacatcattttgctgactaatactaaactgaaacttaat |
32268852 |
T |
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| Q |
214 |
ggagagaattaatatgaagattg |
236 |
Q |
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| T |
32268851 |
ggagagaattaacattaagattg |
32268829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 32809095 - 32808961
Alignment:
| Q |
18 |
gtaaacaggtagtgaa-tctatctctgcattttattcatcacttgctcttgctttctcttcttaacttgctatatgtaaaattttctcttctctttattg |
116 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32809095 |
gtaaacaggtagtgatctctatctctgcattttgttcatcacttgctcttgctttctcttcttaacttgctatatgt----ttttctcttctctttattg |
32809000 |
T |
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| Q |
117 |
catacatttcttt---ccctatcttttccttgataaatt |
152 |
Q |
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||||||||| ||| ||||||||||| ||| ||||||| |
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| T |
32808999 |
catacattttttttcaccctatcttttacttaataaatt |
32808961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 32808923 - 32808854
Alignment:
| Q |
166 |
aaatgttgtttcagcattttgctgactaacactaaactgaaacttaatggagagaattaatatgaagatt |
235 |
Q |
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| T |
32808923 |
aaatgatgttacagcattttgctgactaatacaaaactaaaacttaatggagagaattaatattaagatt |
32808854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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