View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11922_low_12 (Length: 297)
Name: NF11922_low_12
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_low_12 |
 | |
|
| [»] scaffold0214 (2 HSPs) |
| | |
|
| [»] scaffold0159 (2 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 32726018 - 32725752
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32726018 |
gacatgaccatagaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcaattcatcaat |
32725919 |
T |
|
| Q |
115 |
tattcagtgaaaattttagacattttttatataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32725918 |
tattcagtgaaaattttagacattttttatataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttgg |
32725819 |
T |
|
| Q |
215 |
atctttttattataaaaagcataaattttgtaattaaatggagataaatttatgatcatcacataag |
281 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32725818 |
atttttttattacaaaaagcataaattttgtaagtaaatggagataaatttatgatcatcacataag |
32725752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 38926275 - 38926458
Alignment:
| Q |
39 |
taacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag--aca |
136 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
38926275 |
taacctatctcacaaatcgttgttcggttgcttagctacacgaccatacaaccaagtactttctcgattcatcaattattcagtgaagtttttagcaaca |
38926374 |
T |
|
| Q |
137 |
tttttt-atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatctttttattata |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38926375 |
ttttttcatataaaaacatttgattctaattaagtatgttcaagaata--------attcggttctatgttcagtttggat-tttttattata |
38926458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 35329627 - 35329766
Alignment:
| Q |
45 |
atctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttagacattttttat |
144 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| ||||||| |||||| |||||||| |||||||| |||| |||| | |||| | | |||| |
|
|
| T |
35329627 |
atctctcaaatccttgttcggttgcttagctacacgaccatacacccaagctttttctcgtttcatcaaatatttagtggcattttttttattatattat |
35329726 |
T |
|
| Q |
145 |
ataaaaacatttgattctaattaagtttgttcaagaataat |
185 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35329727 |
a-aaaaacatttgattctaattaagtttgtccaagaataat |
35329766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 41138078 - 41138258
Alignment:
| Q |
39 |
taacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag--aca |
136 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |
|
|
| T |
41138078 |
taacctatctcacaaatcgttgttcggttgcttagctacac-gccatacaaccaagcattttctcgattcatcaattattcaatgaagtttttagcaaca |
41138176 |
T |
|
| Q |
137 |
tttttt--atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggat |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
41138177 |
tttttttcatataaaaacatttgattctaattaagtttgttcaagaataattcagttattcggttctatgttcagtttggat |
41138258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 6506728 - 6506906
Alignment:
| Q |
46 |
tctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaa-attt--tagacatttttt |
142 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||| |
|
|
| T |
6506728 |
tctctcaaatcgttgttcggtttcttagctacacgaccatacaaccaagcattttctcgattcatcaattatttagtgaaatatttactag-catttttt |
6506826 |
T |
|
| Q |
143 |
atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatcttttt |
222 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||| || |||||||||| |||||| ||||||||| ||||| |
|
|
| T |
6506827 |
atatgaaaacattttattctaattaagtttgtccaagaataatccagttattcggttctatgtttagtttggattttttt |
6506906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 7567534 - 7567731
Alignment:
| Q |
23 |
catacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgatt-catcaattattcag |
121 |
Q |
| |
|
|||||||||| |||| | |||||||| |||||||||||||| | ||||| |||||| ||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
7567534 |
catacaactaccctattgacctatctatcaaatcgttgttcagttgcttagctaca------tacaacccaatattttctcgatttcatcaattattcaa |
7567627 |
T |
|
| Q |
122 |
tgaaaattttagaca---ttttttatataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatct |
218 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||||||||||||| | |
|
|
| T |
7567628 |
tgaagtttttagagacatttttttatataaaaacatttgattttaattaagtttgttcaagaataattcagttattcggttctatgttcagtttggattt |
7567727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 46352690 - 46352886
Alignment:
| Q |
39 |
taacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag--aca |
136 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
46352690 |
taacctatctcacaaatcgttgttcggttgcttagctacacgaccatacacccaagcattttctcgattcatcaattattcagtgaagtttttagcaaca |
46352789 |
T |
|
| Q |
137 |
tttttt------atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatctttttattata |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
46352790 |
ttttttttcttcatataaaaacatttgattctaattaagtttgttcaagaataattcagttattcggttctatgttcagtttggat-tttttattata |
46352886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 7486722 - 7486543
Alignment:
| Q |
46 |
tctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaatttta--gaca-tttttt |
142 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| | || |||||| |
|
|
| T |
7486722 |
tctctcaaatcgttgttcggtttcttagctacacgaccatacaaccaagcattttctcgattcatcaattatttagtgaaatatttagtggcattttttt |
7486623 |
T |
|
| Q |
143 |
atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatcttttt |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||||| ||||| |
|
|
| T |
7486622 |
atatgaaaacatttgattctaattaagtttgtccaagaataatccagttattcggttctatgttcagtttggattttttt |
7486543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 15722618 - 15722434
Alignment:
| Q |
41 |
acctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttaga--catt |
138 |
Q |
| |
|
|||||||||||| ||| |||||||| | ||| |||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
15722618 |
acctatctctcatatcattgttcggtttcttagctaca----caaacaaccaagcattttctcgattcgtcaattattcagtgaaatatttagaggcatt |
15722523 |
T |
|
| Q |
139 |
ttttat-----ataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatcttttt |
222 |
Q |
| |
|
|||| | |||||| ||||||||||||||||||||||| |||||||||| | |||||| ||| |||| | ||||||||| ||||| |
|
|
| T |
15722522 |
tttttttttaaataaaatcatttgattctaattaagtttgtccaagaataattcggttattcagttctatgattagtttggattttttt |
15722434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 19193251 - 19193166
Alignment:
| Q |
82 |
ccatacaaccaagcattttctcgattcatcaattattcagtgaaaatttt--agacatttttt--atataaaaacatttgattcta |
163 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
19193251 |
ccatacaaccaaacattttctcaattcatcaattattcagtgaagtttttagagacatttttttcatataaaaacatttaattcta |
19193166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 31570070 - 31570255
Alignment:
| Q |
46 |
tctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaatttta--gaca-tttttt |
142 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| | || |||||| |
|
|
| T |
31570070 |
tctctcaaatcgttgttcggtttcttagctacacgaccatacaaccaagcattttctcgattcatcaattatttagtgaaatatttagtggcattttttt |
31570169 |
T |
|
| Q |
143 |
atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatctttttattata |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
31570170 |
atatgaaaacatttgattctaattaagtttgtccaagaataatccagttattcggttctatgttcagtttggatttttttattata |
31570255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 23160218 - 23160025
Alignment:
| Q |
41 |
acctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag----aca |
136 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| | |||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
23160218 |
acctatctctcaaattgttgttcagttgcttagatacacgaccatacaatcaagcattttctcgattcatcaattatttagtgaaatatttagtggcatt |
23160119 |
T |
|
| Q |
137 |
ttttttatataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttgga--tctttttattata |
228 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||| ||| |||||| || ||||| |||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
23160118 |
ttttttatatgaatacattttattctaattaagtttgtccaaaaataatccagttatttggttctatgttcagcttggatttctttttattata |
23160025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 18785168 - 18785023
Alignment:
| Q |
44 |
tatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttagaca---tttt |
140 |
Q |
| |
|
||||||||||||| |||||||| | ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||| |
|
|
| T |
18785168 |
tatctctcaaatctttgttcggtttcttagctacatgaccatacaaccaagcattttctcaattcatcaattattcagtgaaatttttagagacattttt |
18785069 |
T |
|
| Q |
141 |
ttatataaa-aacatttgattctaattaagtttgttcaagaataat |
185 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
18785068 |
ttatataaattttttttgattctaattaagtttgttgaagaataat |
18785023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 14602680 - 14602597
Alignment:
| Q |
141 |
ttatataaaaacatttgattctaattaagtttg--ttcaagaataatacaattattcggttttatgttcagtttggatcttttt |
222 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
14602680 |
ttatataaaaacattttattttaattaagtttgagttcaagaataatacaattattcagttctatgttcagtttggattttttt |
14602597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 18765599 - 18765504
Alignment:
| Q |
22 |
ccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattat |
117 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||||| | ||| |||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
18765599 |
ccatacaactttcctatcgacatatctctcaaatcgttgttcgggttcttagctacacgacaatacaaccaagcattttctctgttcatcaattat |
18765504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 21392538 - 21392381
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
||||| ||||||||||| ||||| | ||| ||||||||||||||||||||| | ||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
21392538 |
gacacaaccatacaactgtcctattgaccaatctctcaaatcgttgttcggtttcttagctaca------------ctagcattttctcaattcatcaat |
21392451 |
T |
|
| Q |
115 |
tattcagtgaaaattttagaca---ttttttatataaaaacatttgattctaattaagtttgttcaagaat |
182 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
21392450 |
tattcagtgaaatttttagagacatttttttatat-aattttttttattctaattaagtttgttcaagaat |
21392381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 20025075 - 20024998
Alignment:
| Q |
16 |
acacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaa |
93 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||||||||||||||||||| | ||| |||||| ||||||||||||| |
|
|
| T |
20025075 |
acacaaccatacaactgtcctatcgacatatctctcaaatcgttgttcgatttcttagctacatggccatacaaccaa |
20024998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 3569330 - 3569521
Alignment:
| Q |
39 |
taacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag--aca |
136 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
3569330 |
taacctatctcacaaatcgttgttcggttgcttagctacacgaccaaacaaccaagtattttctcgattcatcaattattcagtgaagtttttagcaaca |
3569429 |
T |
|
| Q |
137 |
tttttt-atataaaaacatttgattctaattaagtttgttcaagaataatacaatt-attcggttttatgttcagtttggatctttttattat |
227 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
3569430 |
ttttttcatataaaaacatttgattctaattaagtatgttcaagaataattcagttaattcggttctatgttcagtttggat-tttttattat |
3569521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 39702443 - 39702264
Alignment:
| Q |
46 |
tctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaatttta--gaca-tttttt |
142 |
Q |
| |
|
||||||||||| |||||||| | ||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| | || |||||| |
|
|
| T |
39702443 |
tctctcaaatctttgttcggtttcttagctacacgaccatacaaccaaacattttctcgattcatcaattatttagtgaaatatttagtggcattttttt |
39702344 |
T |
|
| Q |
143 |
atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggatcttttt |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||||| ||||| |
|
|
| T |
39702343 |
atatgaaaacatttgattctaattaagtttgtccaagaataatccagttattcggttctatgttcagtttggattttttt |
39702264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 1967034 - 1967165
Alignment:
| Q |
43 |
ctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttaga--ca--tt |
138 |
Q |
| |
|
|||||||||| |||||||||||| | ||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| || || |
|
|
| T |
1967034 |
ctatctctcatatcgttgttcggtttcttagctaca----cgaacaaccaagcattttctcgattcatcaattattcagtgaaatatttagaggcatttt |
1967129 |
T |
|
| Q |
139 |
ttttatataaaaacatttgattctaattaagtttgt |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1967130 |
ttttatataaaatcatttgattctaattaagtttgt |
1967165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 43974053 - 43973877
Alignment:
| Q |
45 |
atctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaatttt--agacatttttt |
142 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
43974053 |
atctctcaaatctttgttcggttgcttagctacacaaccatacaaccaagcattttctcgattcatcaattattcagtgaagtttttagagacatttttt |
43973954 |
T |
|
| Q |
143 |
---atataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||||| |
|
|
| T |
43973953 |
ttcatataaaaacatttgattctaattaagtttgttcaagaataattaagttatttggttctatattcagtttggat |
43973877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 16046653 - 16046474
Alignment:
| Q |
41 |
acctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag----aca |
136 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||| | |||||||| ||||||||||||||||||||| |||||| ||||||| ||||| | |
|
|
| T |
16046653 |
acctatctctcaaattgttgttcggttgcttagctaaacgaccatacaatcaagcattttctcgattcatcgattatttagtgaaatatttagtggcatt |
16046554 |
T |
|
| Q |
137 |
ttttttatataaaaacatttgattctaattaagtttgttcaagaataatacaattattcggttttatgttcagtttggat |
216 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| | || ||| |||||| || ||||||| || | |||||||||||||| |
|
|
| T |
16046553 |
ttttttatatgaatacatttgattctaattaagctggtccaaaaataatccagttattcgattctgtgttcagtttggat |
16046474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 22932809 - 22932954
Alignment:
| Q |
16 |
acacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaatt |
115 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||||||||||||||||| || ||||| |||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
22932809 |
acacggccatacaactgtcctattgacctatctctcaaatcgttgtttggctgcttagctaca------tacaaccgagcattttcttgattcatcaatt |
22932902 |
T |
|
| Q |
116 |
attcagtgaaaatttt--agacatttttt--atataaaaacatttgattcta |
163 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22932903 |
attcagtgaagtttttggagacatttttttcatataaaaacatttgattcta |
22932954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 44967864 - 44968002
Alignment:
| Q |
46 |
tctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttagacattttttata |
145 |
Q |
| |
|
|||| |||||| |||||||| ||||| |||||| ||||||| |||||| |||||||| |||||||| |||| |||| | |||| | | ||||| |
|
|
| T |
44967864 |
tctcccaaatccttgttcggttgcttagctacacgaccatacacccaagctttttctcgtttcatcaaatatttagtggcattttttttattatattata |
44967963 |
T |
|
| Q |
146 |
taaaaacatttgattctaattaagtttgttcaagaataat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44967964 |
-aaaaacatttgattctaattaagtttgtccaagaataat |
44968002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 50378037 - 50378183
Alignment:
| Q |
86 |
acaaccaagcattttctcgattcatcaattattcagtgaaaattttaga--ca--ttttttatataaaaacatttgattctaattaagtttgttcaagaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| || |||||||||||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
50378037 |
acaaccaagcattttctcgattcatcaattattccgtgaaatatttagaggcattttttttatataaaatcatttgattctaattaagtttgtccaggaa |
50378136 |
T |
|
| Q |
182 |
taatacaattattcggttttatgttcagtttggatctttttattata |
228 |
Q |
| |
|
|||| | |||||| ||| |||| | ||||||||| ||||||||||| |
|
|
| T |
50378137 |
taattcggttattcagttctatgattagtttggatttttttattata |
50378183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 8370737 - 8370578
Alignment:
| Q |
41 |
acctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatc--aattattcagtgaaaattt-------t |
131 |
Q |
| |
|
|||||| ||||||||||||||| || |||| |||||| ||||| |||||||| |||||||||| ||||| ||||||| ||||||||||| | |
|
|
| T |
8370737 |
acctatttctcaaatcgttgtttggcagcttagctaca-cgccattcaaccaagtattttctcgactcatcaaaattatttagtgaaaattttcagatat |
8370639 |
T |
|
| Q |
132 |
agacattttt---tatataaaaacatttgattctaa-ttaagtttgttcaagaataataca |
188 |
Q |
| |
|
| | |||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
8370638 |
atatattttttaatatataaaaacatttaattctaatttaagtttgttcaagaaaaataca |
8370578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 22483 - 22628
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
|||||| |||||||||| ||||| | |||||||||||| |||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
22483 |
gacacggccatacaactgtcctattgacctatctctcagatcgttgttcggctgcttagctaca------tacaaccaagcattttcttgattcatcaat |
22576 |
T |
|
| Q |
115 |
tattcagtgaaaatttt--agacatttttt-atataaaaacatttgattcta |
163 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22577 |
tattcagtgatgtttttggagacattttttcatataaaaacatttgattcta |
22628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 1468 - 1325
Alignment:
| Q |
82 |
ccatacaaccaagcattttctcgattcatcaattattcagtgaaaattttag----acattttttatataaaaacatttgattctaattaagtttgttca |
177 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||||||| ||||| | |||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
1468 |
ccatacaaccaaacattttcttgattcatcaattatttagtgaaatatttagtggcattttttttatatgaaaacatttgattctaattaagtttgtcca |
1369 |
T |
|
| Q |
178 |
agaataatacaattattcggttttatgttcagtttggatcttttt |
222 |
Q |
| |
|
|||| || || |||||||||| |||||||| ||||||| ||||| |
|
|
| T |
1368 |
agaa-aaaccagttattcggttctatgttcaatttggattttttt |
1325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 25417858 - 25418004
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
|||||| |||||||||| ||||| | |||||||||||| |||||||||||| ||||| |||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
25417858 |
gacacggccatacaactgtcctattgacctatctctcagatcgttgttcggctgcttagctaca------tacaaccaagcaatttcttgattcatcaat |
25417951 |
T |
|
| Q |
115 |
tattcagtgaaaatttt--agacatttttt--atataaaaacatttgattcta |
163 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
25417952 |
tattcagtgaagttttttgagacatttttttcatataaaaacatttgattcta |
25418004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 5782738 - 5782564
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
||||| ||||||||||| ||||| | ||| | ||| ||||| ||||||||| | ||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
5782738 |
gacacaaccatacaactgtcctattgaccaacctcccaaattgttgttcggtttcttagctacacgaccatacaaccaagcattttctcaattcatcaat |
5782639 |
T |
|
| Q |
115 |
tattcagtgaaaattttagaca---ttttttatataa-aaacatttgattctaattaagtttgttcaagaataat |
185 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
5782638 |
tattcagtgaaatttttagagacatttttttatataattttttttttattctaattaagtttgttcaagaataat |
5782564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 28070 - 27896
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
||||| ||||||||||| ||||| | ||| | ||| ||||| ||||||||| | ||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
28070 |
gacacaaccatacaactgtcctattgaccaacctcccaaattgttgttcggtttcttagctacacgaccatacaaccaagcattttctcaattcatcaat |
27971 |
T |
|
| Q |
115 |
tattcagtgaaaattttagaca---ttttttatataa-aaacatttgattctaattaagtttgttcaagaataat |
185 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
27970 |
tattcagtgaaatttttagagacatttttttatataattttttttttattctaattaagtttgttcaagaataat |
27896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 36201 - 36027
Alignment:
| Q |
15 |
gacacgaccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaat |
114 |
Q |
| |
|
||||| ||||||||||| ||||| | ||| | ||| ||||| ||||||||| | ||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
36201 |
gacacaaccatacaactgtcctattgaccaacctcccaaattgttgttcggtttcttagctacacgaccatacaaccaagcattttctcaattcatcaat |
36102 |
T |
|
| Q |
115 |
tattcagtgaaaattttagaca---ttttttatataa-aaacatttgattctaattaagtttgttcaagaataat |
185 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
36101 |
tattcagtgaaatttttagagacatttttttatataattttttttttattctaattaagtttgttcaagaataat |
36027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 31657 - 31518
Alignment:
| Q |
22 |
ccatacaactatcctactaacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaattattcag |
121 |
Q |
| |
|
|||||||||| ||||| | |||||||||||| ||||||||| || | ||| |||||| |||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
31657 |
ccatacaactgtcctattgacctatctctcatatcgttgtttggctacttagctaca------tacaaccaagcattttcttgattcatcaattatccag |
31564 |
T |
|
| Q |
122 |
tgaaaatttt--agacatttttt--atataaaaacatttgattcta |
163 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
31563 |
tgaagtttttgaagacatttttttcatataaaaacatttgattcta |
31518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 50497 - 50571
Alignment:
| Q |
39 |
taacctatctctcaaatcgttgttcggatgctttgctacagagccatacaaccaagcattttctcgattcatcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50497 |
taacctatctctcaaatcgttgttcgattgcttagctacacgaccatacaaccaagcattttctcgattcatcaa |
50571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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