View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11922_low_16 (Length: 239)

Name: NF11922_low_16
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11922_low_16
NF11922_low_16
[»] chr3 (4 HSPs)
chr3 (4-224)||(7960952-7961173)
chr3 (93-221)||(26506370-26506499)
chr3 (84-174)||(36073458-36073548)
chr3 (18-71)||(42456947-42457000)
[»] chr2 (2 HSPs)
chr2 (89-221)||(20025101-20025235)
chr2 (24-72)||(19996548-19996596)
[»] chr1 (1 HSPs)
chr1 (5-221)||(11020024-11020247)
[»] chr5 (2 HSPs)
chr5 (90-213)||(33247811-33247938)
chr5 (119-213)||(8132991-8133086)
[»] chr4 (3 HSPs)
chr4 (114-217)||(24684566-24684670)
chr4 (86-152)||(9357817-9357883)
chr4 (14-72)||(18991120-18991178)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 7961173 - 7960952
Alignment:
Q  4 ttaacgccttaatatgagataacaaatgatgaaaaacacgtaaaacatttgcaccatcttcaatcatttaacagggagagaatcc-tttgtacaatgacc 102  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  7961173 ttaatgccttaatatgagataacaaatgataaaaaacacataaaacatttgcaccatcttcaatcatttaacggggagagaatccctttgtacaatgacc 7961074  T
Q  103 taactaaatgtatgtggtttgtctatcaaaagatcatggtaaatgccccacaaaagccttttaattaagcaaatataaaataagtatgacgattaattta 202  Q
    |||||||||  || |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7961073 taactaaatccatattatttgtctatcaaaagatcatggtaaatgtcccacaaaagccttttaattaagcaaatataaaataagtatgacgattaattta 7960974  T
Q  203 ttagaagaaaatgttagttatt 224  Q
    ||||||||||||||||||||||    
T  7960973 ttagaagaaaatgttagttatt 7960952  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 26506370 - 26506499
Alignment:
Q  93 tacaatgacctaactaaatgtatgtggtttgtctatcaaaagatcatggtaaatgccccacaaaagccttttaattaagcaaa-tataaaataagtatga 191  Q
    ||||||||| |||  ||||  |||| ||||| |||||||||||  ||||||||||||| |||||  ||||||||  ||| ||| ||||||| | ||||||    
T  26506370 tacaatgacttaatgaaattcatgttgtttgcctatcaaaagactatggtaaatgcccaacaaatcccttttaacaaagaaaaatataaaacaggtatga 26506469  T
Q  192 cgattaatttattagaagaaaatgttagtt 221  Q
     ||||||||||||| |||||||||||||||    
T  26506470 ggattaatttattaaaagaaaatgttagtt 26506499  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 36073458 - 36073548
Alignment:
Q  84 aatcctttgtacaatgacctaactaaatgtatgtggtttgtctatcaaaagatcatggtaaatgccccacaaaagccttttaattaagcaa 174  Q
    |||||||||||||||||| | |  |||| ||||   |||| |||| |||||| ||| ||||||||| |||||||| ||||||| |||||||    
T  36073458 aatcctttgtacaatgacttgataaaatctatggtttttgcctataaaaagaccatagtaaatgcctcacaaaaggcttttaactaagcaa 36073548  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 42456947 - 42457000
Alignment:
Q  18 tgagataacaaatgatgaaaaacacgtaaaacatttgcaccatcttcaatcatt 71  Q
    ||||| ||||||  |||||||| |  ||||||||||||||||||||||||||||    
T  42456947 tgagacaacaaacaatgaaaaatatataaaacatttgcaccatcttcaatcatt 42457000  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 20025101 - 20025235
Alignment:
Q  89 tttgtacaatgacctaactaaatgtatgtggtttgtctatcaaaagatcatggtaaatgcccc-acaaaagccttttaattaagcaaa-tataaaataag 186  Q
    |||||||||| || |||  ||||  |||| ||||||||||||| |||  || |||||| |||| ||||||| |||||||||||||||| ||||||| ||     
T  20025101 tttgtacaataacttaataaaatccatgttgtttgtctatcaagagacaattgtaaatacccccacaaaagtcttttaattaagcaaaatataaaacaaa 20025200  T
Q  187 tatgacgattaatttattagaagaaaatgttagtt 221  Q
     |||| ||||||||||| |||||||||||||||||    
T  20025201 catgaagattaatttatcagaagaaaatgttagtt 20025235  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 19996548 - 19996596
Alignment:
Q  24 aacaaatgatgaaaaacacgtaaaacatttgcaccatcttcaatcattt 72  Q
    ||||||||| |||||||| |||||||| |  ||||||||||||||||||    
T  19996548 aacaaatgacgaaaaacatgtaaaacactcacaccatcttcaatcattt 19996596  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 11020247 - 11020024
Alignment:
Q  5 taacgccttaatatgagataacaaatgatgaaaaacacgtaaaacatttgcaccatcttcaatcatttaacagg----gagagaatcc-tttgtacaatg 99  Q
    |||| ||||||  |||||||||||||||||||||| | |||||||| |  ||||||||||||| |||| |  ||    |||| ||||| |||||||||||    
T  11020247 taacaccttaacctgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgattttaatggcaaagagataatccatttgtacaatg 11020148  T
Q  100 acctaactaaatgt-atgtggtttgtctatcaaaagatcatggtaaatgccccacaaaagccttttaattaagcaaa-tataaaataagtatgacgatta 197  Q
    || | | ||||  | |||| ||||| ||||||||||| | ||||||||| |  ||||||| |||| || |||||||| ||||||| ||  |||| |||||    
T  11020147 actttaataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtctttcaactaagcaaaatataaaacaaacatgaagatta 11020048  T
Q  198 atttattagaagaaaatgttagtt 221  Q
    |||||| |||| ||||||||||||    
T  11020047 atttataagaaaaaaatgttagtt 11020024  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 33247811 - 33247938
Alignment:
Q  90 ttgtacaatgacctaactaaatgtatgtggtttgtctatcaaaagatcatggtaaatgccc-cacaaaagccttttaattaag---caaatataaaataa 185  Q
    |||||||||||| |||  |||| ||||| ||||||||||||||||| ||| | |||||||| |||||||||||||||| ||||    |||||||||| ||    
T  33247811 ttgtacaatgacttaataaaatctatgttgtttgtctatcaaaagaccataggaaatgccctcacaaaagccttttaactaagtaaaaaatataaaacaa 33247910  T
Q  186 gtatgacgattaatttattagaagaaaa 213  Q
    | | || |||||||||||| ||||||||    
T  33247911 gcacgaagattaatttatttgaagaaaa 33247938  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 8132991 - 8133086
Alignment:
Q  119 gtttgtctatcaaaagatcatggtaaatgccccacaaaagccttttaattaagc-aaatataaaataagtatgacgattaatttattagaagaaaa 213  Q
    ||||| || ||||||||||||||||||| | ||||||||| ||||||| ||| | |||||||||| ||| |||| |||||| ||||||||||||||    
T  8132991 gtttgcctctcaaaagatcatggtaaatactccacaaaagtcttttaactaaccaaaatataaaacaagcatgaagattaagttattagaagaaaa 8133086  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 24684566 - 24684670
Alignment:
Q  114 atgtggtttgtctatcaaaagatcatggtaaatgccccacaaaagccttttaattaagcaaa-tataaaataagtatgacgattaatttattagaagaaa 212  Q
    |||| ||||| || ||||||||||||||||||| |  |||||||| ||||| | ||| |||| ||||||| ||| |||| ||||||| ||||||||||||    
T  24684566 atgttgtttgcctttcaaaagatcatggtaaatacttcacaaaagtctttttactaaacaaaatataaaacaagcatgaagattaatctattagaagaaa 24684665  T
Q  213 atgtt 217  Q
    |||||    
T  24684666 atgtt 24684670  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 9357817 - 9357883
Alignment:
Q  86 tcctttgtacaatgacctaactaaatgtatgtggtttgtctatcaaaagatcatggtaaatgcccca 152  Q
    |||||||||||||||| |||  ||||| |||| ||||||||||||| ||| ||||||| ||||||||    
T  9357817 tcctttgtacaatgacttaatgaaatgcatgttgtttgtctatcaatagaccatggtagatgcccca 9357883  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 18991120 - 18991178
Alignment:
Q  14 aatatgagataacaaatgatgaaaaacacgtaaaacatttgcaccatcttcaatcattt 72  Q
    |||||||||||| ||||||| |||||||| |||||||  || |||||||||||||||||    
T  18991120 aatatgagataaaaaatgataaaaaacacataaaacacctgtaccatcttcaatcattt 18991178  T

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