View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_low_17 (Length: 237)
Name: NF11922_low_17
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 29519135 - 29518929
Alignment:
| Q |
19 |
ataggcttggagacagcacgagtcttggctctccgaaaggcgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatac |
118 |
Q |
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| T |
29519135 |
ataggcttggagacagcacgagtcttggctctccgaaaggtgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatac |
29519036 |
T |
|
| Q |
119 |
tccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatct |
218 |
Q |
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| T |
29519035 |
tacaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatct |
29518936 |
T |
|
| Q |
219 |
tcttctc |
225 |
Q |
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|| |||| |
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| T |
29518935 |
tcctctc |
29518929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 40100888 - 40101094
Alignment:
| Q |
19 |
ataggcttggagacagcacgagtcttggctctccgaaaggcgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatac |
118 |
Q |
| |
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||||| ||||||||| || |||| |||||||| | |||| ||||| ||||| || ||||||||||| || |||||| ||||||| |||||| ||| |
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| T |
40100888 |
atagggttggagacaacaagagtgttggctcttaggaaggtccatgttatcattgctgcaagaaacattgaatctgcagaggaagccaaacaacaaataa |
40100987 |
T |
|
| Q |
119 |
tccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatct |
218 |
Q |
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||||| ||| | ||||| ||||| ||||||||||| || ||||| || ||| |||||||| |||| || || || |||||| | ||||| ||||| |
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| T |
40100988 |
cacaagagaacaaatctgcacgagtggacataatgaaacttgacctatgctcaacaaagtctgtccgatcattcgtcgacaacttcattgctcttgatct |
40101087 |
T |
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| Q |
219 |
tcttctc |
225 |
Q |
| |
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|| |||| |
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| T |
40101088 |
tcctctc |
40101094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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