View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_low_4 (Length: 514)
Name: NF11922_low_4
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Complemental strand, 7184084 - 7183609
Alignment:
| Q |
20 |
gatacattcaa-ttattcaatgcatgaaagttagcatgggcgagaagcaccaagaagtatatgcagatatgacaagaaagtgataaagcctcaggttgga |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7184084 |
gatacattcaaattattcaatgcatgaaagttagcatgggcgagaagcaccaagaagtatatgcagatatgacaagaaagtgataaagcctcaggttgta |
7183985 |
T |
|
| Q |
119 |
cattcatttttataattgacagataatggcatatagcataaaccaaaaagtttcacggtgtttgtggtgaccgttttataaagactgttatgaagacaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7183984 |
cattcatttttataattgacagataatggcatatagcataaaccaaaaagtttcacggtgtttgtggtgaccgttttataaagactgttatgaagac--- |
7183888 |
T |
|
| Q |
219 |
ctatgaaagtgtattggttgcagttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaaatgtcctcaacccatccccaaattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7183887 |
-tatgaaagtgtattggttgcagttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaaatgtcctcaacccatccccaaattt |
7183789 |
T |
|
| Q |
319 |
ataagacaaaatgaagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaataaaactttg |
418 |
Q |
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| T |
7183788 |
ataagacaaaatgaagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaataaaactttg |
7183689 |
T |
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| Q |
419 |
acttcatgtacatttaaaatttaaaatcaaaaccaagtgataatatgacaagtttatttcatgaagatacaagttgaata |
498 |
Q |
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| T |
7183688 |
acttcatgtacatttaaaatttaaaatcaaaaccaagtgataatatgacaagtttatttcatgaagatacaagttgaata |
7183609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 332 - 455
Target Start/End: Complemental strand, 7155193 - 7155069
Alignment:
| Q |
332 |
aagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaat-aaaactttgacttcatgtaca |
430 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||| | || |
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| T |
7155193 |
aagatgcgtgacaaaaataggaaaagcattctactcaccaaatcactgttatttcttagaaagaaatggaaccttaataaaaactttgacttcatctgca |
7155094 |
T |
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| Q |
431 |
tttaaaatttaaaatcaaaaccaag |
455 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
7155093 |
tttagaatttaaaatctaaaccaag |
7155069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 231 - 443
Target Start/End: Complemental strand, 7188928 - 7188718
Alignment:
| Q |
231 |
attggttgcagttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaaatgt----cctcaacccatccccaaatttataagaca |
326 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||| || |||| | ||||||||||| |||| || ||||| ||| ||||||||| |
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| T |
7188928 |
attgattgcagttaaatcctacaaaaggatataatttaacattttcccctgaagttactaaaaatgtctgacctctgcctatccctaaaactataagaca |
7188829 |
T |
|
| Q |
327 |
aaatgaagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaataaaactttgacttcatg |
426 |
Q |
| |
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||||||||| || ||||||||| |||||||| ||||| ||||||||| ||| | |||||||||||| | ||| ||||||| |||||||||| |
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| T |
7188828 |
aaatgaagacgcatgacaaaaataggataagtggtctac---tcaaatcat---cattcccaagaaagaaatggcgccttattaaaactctgacttcatg |
7188735 |
T |
|
| Q |
427 |
tacatttaaaatttaaa |
443 |
Q |
| |
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||||||||||||||||| |
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| T |
7188734 |
tacatttaaaatttaaa |
7188718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 7155246 - 7155205
Alignment:
| Q |
129 |
tataattgacagataatggcatatagcataaaccaaaaagtt |
170 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||| |
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| T |
7155246 |
tataattgacagataatgtcatatagcataacccaaaaagtt |
7155205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 43415796 - 43415744
Alignment:
| Q |
385 |
tcttagaaagaaatggaacattaataaaactttgacttcatgtacatttaaaa |
437 |
Q |
| |
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|||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
43415796 |
tcttggaaagaaatggaaccttattaaaactttgacttcatatacatttaaaa |
43415744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 43416008 - 43415954
Alignment:
| Q |
221 |
atgaaagtgtattggttgcagttaaatcccacaaaaggatataatttaacatttt |
275 |
Q |
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||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
43416008 |
atgaaagtgaattgattgcacttaaatcatacaaaaggatataatttaacatttt |
43415954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 45149113 - 45149062
Alignment:
| Q |
242 |
ttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaa |
293 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
45149113 |
ttaaatcatacaaaaggatataatttaacattttctcttgaaattactaaaa |
45149062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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