View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_low_6 (Length: 415)
Name: NF11922_low_6
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 7183985 - 7183609
Alignment:
| Q |
19 |
acattcatttttataattgacagataatggcatatagcataaaccaaaaagtttcacggtgtttgtggtgaccgttttataaagactgttatgaagacag |
118 |
Q |
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| T |
7183985 |
acattcatttttataattgacagataatggcatatagcataaaccaaaaagtttcacggtgtttgtggtgaccgttttataaagactgttatgaagac-- |
7183888 |
T |
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| Q |
119 |
actatgaaagtgtattggttgcagttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaaatgtcctcaacccatccccaaatt |
218 |
Q |
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| T |
7183887 |
--tatgaaagtgtattggttgcagttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaaatgtcctcaacccatccccaaatt |
7183790 |
T |
|
| Q |
219 |
tataagacaaaatgaagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaataaaacttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7183789 |
tataagacaaaatgaagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaataaaacttt |
7183690 |
T |
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| Q |
319 |
gacttcatgtacatttaaaatttaaaatcaaaaccaagtgataatatgacaagtttatttcatgaagatacaagttgaata |
399 |
Q |
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| T |
7183689 |
gacttcatgtacatttaaaatttaaaatcaaaaccaagtgataatatgacaagtttatttcatgaagatacaagttgaata |
7183609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 233 - 356
Target Start/End: Complemental strand, 7155193 - 7155069
Alignment:
| Q |
233 |
aagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaat-aaaactttgacttcatgtaca |
331 |
Q |
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| T |
7155193 |
aagatgcgtgacaaaaataggaaaagcattctactcaccaaatcactgttatttcttagaaagaaatggaaccttaataaaaactttgacttcatctgca |
7155094 |
T |
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| Q |
332 |
tttaaaatttaaaatcaaaaccaag |
356 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
7155093 |
tttagaatttaaaatctaaaccaag |
7155069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 132 - 344
Target Start/End: Complemental strand, 7188928 - 7188718
Alignment:
| Q |
132 |
attggttgcagttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaaatgt----cctcaacccatccccaaatttataagaca |
227 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||| || |||| | ||||||||||| |||| || ||||| ||| ||||||||| |
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| T |
7188928 |
attgattgcagttaaatcctacaaaaggatataatttaacattttcccctgaagttactaaaaatgtctgacctctgcctatccctaaaactataagaca |
7188829 |
T |
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| Q |
228 |
aaatgaagatgcgtgacaaaaacaggataagcattctactcatcaaatcattgctatttcttagaaagaaatggaacattaataaaactttgacttcatg |
327 |
Q |
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| T |
7188828 |
aaatgaagacgcatgacaaaaataggataagtggtctac---tcaaatcat---cattcccaagaaagaaatggcgccttattaaaactctgacttcatg |
7188735 |
T |
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| Q |
328 |
tacatttaaaatttaaa |
344 |
Q |
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||||||||||||||||| |
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| T |
7188734 |
tacatttaaaatttaaa |
7188718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 7155246 - 7155205
Alignment:
| Q |
30 |
tataattgacagataatggcatatagcataaaccaaaaagtt |
71 |
Q |
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| T |
7155246 |
tataattgacagataatgtcatatagcataacccaaaaagtt |
7155205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 43415796 - 43415744
Alignment:
| Q |
286 |
tcttagaaagaaatggaacattaataaaactttgacttcatgtacatttaaaa |
338 |
Q |
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|||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
43415796 |
tcttggaaagaaatggaaccttattaaaactttgacttcatatacatttaaaa |
43415744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 43416008 - 43415954
Alignment:
| Q |
122 |
atgaaagtgtattggttgcagttaaatcccacaaaaggatataatttaacatttt |
176 |
Q |
| |
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||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
43416008 |
atgaaagtgaattgattgcacttaaatcatacaaaaggatataatttaacatttt |
43415954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 45149113 - 45149062
Alignment:
| Q |
143 |
ttaaatcccacaaaaggatataatttaacattttaccttgaaatcactaaaa |
194 |
Q |
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| T |
45149113 |
ttaaatcatacaaaaggatataatttaacattttctcttgaaattactaaaa |
45149062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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