View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11922_low_7 (Length: 404)
Name: NF11922_low_7
Description: NF11922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11922_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 4265084 - 4264697
Alignment:
| Q |
13 |
agatgtacacatcattattccaatcttcatctaatttcatagttccaagtggaagggaacaaagaattaattggttactacttacttacttcagtaaatg |
112 |
Q |
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| T |
4265084 |
agatgtacacatcattattccaatcttcatctaatttcatagttccaagtggaagggaacaaagaattaattggttactacttacttacttcagtaaatg |
4264985 |
T |
|
| Q |
113 |
gacctcaagtttgtactataaatatgactctctatctttatttgctttccatcccataaacccttctcttattcatagttatttttagtttctcttacat |
212 |
Q |
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| T |
4264984 |
gacctcaagtttgtactataaatatgactctctatctttatttgctttccatcccataaacccttctcttattcatagttatttttagtttctcttacat |
4264885 |
T |
|
| Q |
213 |
ttagcatcctaaataattccttgaatttctctcttctttgtgcttgacattttgtcattgaacatgatggaacataattttaagcaccaaattggttttg |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4264884 |
ttagtatcctaaataattccttgaatttctctcttctttgtgcttgacattttgtcattgaacatgatggaacataattttaagcaccaaattggtttta |
4264785 |
T |
|
| Q |
313 |
tttgtgtcatgttgttcttacctgtcttgtgttcctctcaagactcttttgtttgctctagagcaacctattatggtagcccagattg |
400 |
Q |
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| T |
4264784 |
tttgtgtcatgttgttcttacctgtcttgtgttcctctcaagactcttttgtttgctctagagcaacctattatggtagcccagattg |
4264697 |
T |
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