View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_high_11 (Length: 434)
Name: NF11923_high_11
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 9381260 - 9380852
Alignment:
| Q |
15 |
ccagcaaccttaagtggcacaccaactttaagcatgtctttaatttcaatatgtccagtggcaaatccaacaacatttgaaggtgttgatgttggaagcc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9381260 |
ccagcaaccttaagtggcacaccaactttaagcatgtctttaatttcaatatgtccagtggcaaatccaacaacatttgaaggtgttgatgttggaagcc |
9381161 |
T |
|
| Q |
115 |
agaatgcaaactcagttgctataccaccagggatcataagaagaagtggatgaacatgcatatttatggctatgtgatacataagtggaacaagaagtgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9381160 |
agaatgcaaactcagttgctataccaccagggatcataagaagaagtggatgaacatgcatatttatggctatgtgatacaaaagtggaacaagaagtgt |
9381061 |
T |
|
| Q |
215 |
ggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgccaagtatggaacatcttttaagaattct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9381060 |
ggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgctaagtatggaacatcttttaagaattct |
9380961 |
T |
|
| Q |
315 |
aaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagcaaaattaggttccacggtaactttt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9380960 |
aaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagcaaaattaggttccatggtaactttt |
9380861 |
T |
|
| Q |
415 |
tgcattcat |
423 |
Q |
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| T |
9380860 |
tgcattcat |
9380852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 55739273 - 55738865
Alignment:
| Q |
15 |
ccagcaaccttaagtggcacaccaactttaagcatgtctttaatttcaatatgtccagtggcaaatccaacaacatttgaaggtgttgatgttggaagcc |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | |||| ||||||||| || ||||| ||||| ||||| |||||||| || ||||| || |||||| |
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| T |
55739273 |
ccagcaaccttaagtggcagaccaactttgagcgtatcttgaatttcaatgtgaccagtagcaaaaccaactacatttgagggagttgacgtaggaagca |
55739174 |
T |
|
| Q |
115 |
agaatgcaaactcagttgctataccaccagggatcataagaagaagtggatgaacatgcatatttatggctatgtgatacataagtggaacaagaagtgt |
214 |
Q |
| |
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|||| ||||| ||||| || || | || ||||||||||||||||| ||||| ||||||||| | | ||||| ||||| | |||||||| || |||||| |
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| T |
55739173 |
agaaagcaaattcagtagcaattgctcctgggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtggaataataagtgt |
55739074 |
T |
|
| Q |
215 |
ggctgtggcatcattggaagtgatgaattcagtgataatgctacatagtagactaacagcaggaacaattgccaagtatggaacatcttttaagaattct |
314 |
Q |
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|| ||||||||||| ||||||||||||||||| ||||| |||| || |||||||| |||||| |||||||||| ||||| |||||| |||||| ||| |
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| T |
55739073 |
agcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatcttctaagaaatct |
55738974 |
T |
|
| Q |
315 |
aaggcttttgacattacatcagctagaccactagattgtactccatctgctaaggcaaatccagctcctagaagcaaaattaggttccacggtaactttt |
414 |
Q |
| |
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|| ||||| || | ||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||| || | ||||||||||||||| |||| || | |
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| T |
55738973 |
aaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttccaaggtagtttct |
55738874 |
T |
|
| Q |
415 |
tgcattcat |
423 |
Q |
| |
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||||||||| |
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|
| T |
55738873 |
tgcattcat |
55738865 |
T |
|
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