View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_high_13 (Length: 408)

Name: NF11923_high_13
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_high_13
NF11923_high_13
[»] chr6 (2 HSPs)
chr6 (12-391)||(14264784-14265163)
chr6 (181-385)||(2328554-2328758)
[»] chr5 (3 HSPs)
chr5 (180-386)||(25834787-25834993)
chr5 (181-319)||(41349422-41349560)
chr5 (11-112)||(25834428-25834529)
[»] chr7 (4 HSPs)
chr7 (180-340)||(20602959-20603119)
chr7 (182-340)||(20621948-20622106)
chr7 (19-113)||(20603175-20603269)
chr7 (19-113)||(20622194-20622288)
[»] chr4 (1 HSPs)
chr4 (180-385)||(17183097-17183302)
[»] chr3 (1 HSPs)
chr3 (181-333)||(25794184-25794336)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 14265163 - 14264784
Alignment:
Q  12 agagaacatcttcaattggttaacgaatgagccaataattgctaatgctgctgcaactatctgtagggtgatggatgaaattgtgtccagtgaggtattt 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14265163 agagaacatcttcaattggttaacgaatgagccaattattgctaatgctgctgcaactatctgtagggtgatggatgaaattgtgtccagtgaggtattt 14265064  T
Q  112 attttaattatatccaaattatttcttccataatatactattttttacaaggattatttctcattgtccagtttgaacataaaagaggacatgtttgctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14265063 attttaattatatccaaattatttcttccataatatactattttttacaaggattatttctcattgtccagtttgaacataaaagaggacatgtttgctc 14264964  T
Q  212 attgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaagagagttgcaatcgcttggaaagatataaacaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14264963 attgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaagagagttgcaatcgcttggaaagatataaacaaa 14264864  T
Q  312 gaatgtctaaggccaaccgaagctccaatcgagtttctaacccgcgctctcaatttttcgcgttttatggatgtgtttta 391  Q
    |||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14264863 gaatgtctaaggccaaccgaagttccaatggattttctaactcgcgctctcaatttttcgcgttttatggatgtgtttta 14264784  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 2328554 - 2328758
Alignment:
Q  181 agtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaagag 280  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||||||| | |||||||||||||||||||||||| |||||      
T  2328554 agtttgaacgtaaaagaggacatgtttgctcattgctggattgctatatgaagcaatatggtatgtcaagggaagctgctattcaagaatgcaaaaagga 2328653  T
Q  281 agttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagctccaatcgagtttctaacccgcgctctcaatttttcgcgttttatg 380  Q
    | ||||||| |||||||||| | ||||    |||||||| ||||||||| ||| ||||||   |||||||||||||||||||||  || |||||||||||    
T  2328654 aattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatg 2328753  T
Q  381 gatgt 385  Q
    |||||    
T  2328754 gatgt 2328758  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 180 - 386
Target Start/End: Original strand, 25834787 - 25834993
Alignment:
Q  180 cagtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaaga 279  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||| || || || |||| |||| |||||||||||||||||||||||||||| |||     
T  25834787 cagttcgagcataaaagagaacatgtttgctcattgttggattgctacatgaagcagtatgatatgtctagggaagctgctattcaagaatgccataagg 25834886  T
Q  280 gagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagctccaatcgagtttctaacccgcgctctcaatttttcgcgttttat 379  Q
    || ||||||| |||||||||||||||||  | |||||||| ||||||||| ||| ||||||    ||||| |  || |||||||||||||||||||||||    
T  25834887 gaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgccttttcttattcgtgctctcaatttttcgcgttttat 25834986  T
Q  380 ggatgtg 386  Q
    |||||||    
T  25834987 ggatgtg 25834993  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 319
Target Start/End: Complemental strand, 41349560 - 41349422
Alignment:
Q  181 agtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaagag 280  Q
    |||||||||| ||||||| |||||||| |||||| ||||| |||||||| |  ||||||  |||  |||| |||| ||| ||||||||| | | ||||||    
T  41349560 agtttgaacaaaaaagagaacatgtttcctcattcttggaatgctatatgaggcaatataatatctctagagaagttgccattcaagaaggtcgaaagag 41349461  T
Q  281 agttgcaatcgcttggaaagatataaacaaagaatgtct 319  Q
    | ||| |   |||||||||||||| || |||||||||||    
T  41349460 aattgtagatgcttggaaagatattaataaagaatgtct 41349422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 25834428 - 25834529
Alignment:
Q  11 cagagaacatcttcaattggttaacgaatgagccaataattgctaatgctgctgcaactatctgtagggtgatggatgaaattgtgtccagtgaggtatt 110  Q
    |||||||||||||||||||| |||| ||||| |||| ||||| || ||| || || | | | || ||| | |||||||||||||| ||||||||||||||    
T  25834428 cagagaacatcttcaattgggtaacaaatgacccaaaaattgttagtgccgcagccaatctttgcaggttaatggatgaaattgtctccagtgaggtatt 25834527  T
Q  111 ta 112  Q
    ||    
T  25834528 ta 25834529  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 340
Target Start/End: Complemental strand, 20603119 - 20602959
Alignment:
Q  180 cagtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaaga 279  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||| || |||| |||| ||||||||||||||||||||| |||| |    
T  20603119 cagtttgaacagaaaagaggacatgtttgctcattgttagattgttatatgaagcaatttgatatgtctagagaagctgctattcaagaatgcaaaaata 20603020  T
Q  280 gagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagctccaat 340  Q
    || |  |||| | |||||||||||||||  |||||||||| ||||||||| ||| ||||||    
T  20603019 gaatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaat 20602959  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 340
Target Start/End: Complemental strand, 20622106 - 20621948
Alignment:
Q  182 gtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaagaga 281  Q
    ||||||||| |||||||| || |||||||||||||| ||||| ||||| || |||| || |||| | || ||||||||||||||||||||| |||| |||    
T  20622106 gtttgaacagaaaagagggcaagtttgctcattgttagattgttatatgaagcaatttgatatgtcgagagaagctgctattcaagaatgcaaaaataga 20622007  T
Q  282 gttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagctccaat 340  Q
     |  |||| | |||||||||||||||  |||||||||| ||||||||| ||| ||||||    
T  20622006 atgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaat 20621948  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 20603269 - 20603175
Alignment:
Q  19 atcttcaattggttaacgaatgagccaataattgctaatgctgctgcaactatctgtagggtgatggatgaaattgtgtccagtgaggtatttat 113  Q
    ||||||| |||| || | |||||||||| ||||| ||| || ||||||||| | || ||| | |||||||||||||| |||||||||||||||||    
T  20603269 atcttcatttgggtatcaaatgagccaagaattgttaacgccgctgcaactctttgcaggctaatggatgaaattgtttccagtgaggtatttat 20603175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 20622288 - 20622194
Alignment:
Q  19 atcttcaattggttaacgaatgagccaataattgctaatgctgctgcaactatctgtagggtgatggatgaaattgtgtccagtgaggtatttat 113  Q
    |||||||||||| || | |||||||||| ||||| ||| || ||||||||| | || ||| | |||||||||||||| ||||  |||||||||||    
T  20622288 atcttcaattgggtatcaaatgagccaagaattgttaacgccgctgcaactctttgcaggctaatggatgaaattgtttccaacgaggtatttat 20622194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 180 - 385
Target Start/End: Original strand, 17183097 - 17183302
Alignment:
Q  180 cagtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaaga 279  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||| ||  ||||   |||  |||| |||||| ||||||||||||||||||| |    
T  17183097 cagtttgaacataaaagaggacatgtttcctcattcttggaatgctatatgaaggaatacaatatatctagagaagcttctattcaagaatgccaaaaaa 17183196  T
Q  280 gagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagctccaatcgagtttctaacccgcgctctcaatttttcgcgttttat 379  Q
    ||||||  |  |||||||||||||||||  |||||||||| | ||||||| ||| |||||     |||||||| |||  | ||||| | |||||||||||    
T  17183197 gagttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgctttttctaactcgcattgtcaatctctcgcgttttat 17183296  T
Q  380 ggatgt 385  Q
    ||||||    
T  17183297 ggatgt 17183302  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 333
Target Start/End: Original strand, 25794184 - 25794336
Alignment:
Q  181 agtttgaacataaaagaggacatgtttgctcattgttggattgctatataaaacaatatggtatgactagggaagctgctattcaagaatgccaaaagag 280  Q
    |||||||||| ||||||| |||||||| ||||||  |||| || ||||| ||| |||||| | || ||||||||||||| ||||||||| ||| ||||||    
T  25794184 agtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgatgtgtctagggaagctgccattcaagaaggccgaaagag 25794283  T
Q  281 agttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaag 333  Q
    | ||      |||||||||||||||||  |||||||||| | |||||| ||||    
T  25794284 aattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaag 25794336  T

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