View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11923_high_14 (Length: 395)
Name: NF11923_high_14
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 42268485 - 42268124
Alignment:
| Q |
11 |
cacagaacaacgaaatggacaagtctatatgagtcggacccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42268485 |
cacaaaacaacgaaatggacaagtctatatgagtcggatccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatc |
42268386 |
T |
|
| Q |
111 |
tctaagctcctaataccaccacaagtaccacccaaagagaataaatttcctcaaaagtaaacttcaactgcatcaacagacaacaaaataaactccctat |
210 |
Q |
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|||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42268385 |
tctaagctgctaataccaccacaagtacctcc-aaagagaataaatttcctcaaaagtaaacttcaactgcatcaaaagacaacaaaataaactccctat |
42268287 |
T |
|
| Q |
211 |
accaccccatcacaataacctcccaaaaaatggaaaacacaatatgactaaaataccatccaagctcaacaccttcaaagtacgtacaaacagagcacga |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42268286 |
accaccccatcataataacctcccaaaaaatggaaaacacaatatgactaaaatatcatccaagctcaacaccttcaaagtacgtacaaatagagcacga |
42268187 |
T |
|
| Q |
311 |
caccttgatcctggaatccgatctcgataacagcaacccaagagcaataactgtggaggatta |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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|
| T |
42268186 |
caccttgatcctggaatccgatctcgataacagcaacccaagagcaacaattgtggagcatta |
42268124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 144 - 322
Target Start/End: Complemental strand, 2070667 - 2070489
Alignment:
| Q |
144 |
aaagagaataaatttcctcaaaagtaaacttc-aactgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatg |
242 |
Q |
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|||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2070667 |
aaagagaataaattccctcaaaaataaactaccaactgcatccaaagacaacaaaataaactcccaataccaccccatcacaataacctcccaaaaaatg |
2070568 |
T |
|
| Q |
243 |
gaaaacacaatatgactaaaataccatccaagctcaacaccttcaaagtacgtacaaacagagcacgacaccttgatcct |
322 |
Q |
| |
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|||||||||||| |||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2070567 |
gaaaacacaataggactcaaatacc-tccaaactcaacaccttcaaaatacgtacaaacagagcacgacaccttgatcct |
2070489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 144 - 322
Target Start/End: Complemental strand, 2075013 - 2074835
Alignment:
| Q |
144 |
aaagagaataaatttcctcaaaagtaaacttc-aactgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatg |
242 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2075013 |
aaagagaataaattccctcaaaaataaactaccaactgcatccaaagacaacaaaataaactcccaataccaccccatcacaataacctcccaaaaaatg |
2074914 |
T |
|
| Q |
243 |
gaaaacacaatatgactaaaataccatccaagctcaacaccttcaaagtacgtacaaacagagcacgacaccttgatcct |
322 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2074913 |
gaaaacacaataggactcaaatacc-tccaaactcaacaccttcaaaatacgtacaaacagagcacgacaccttgatcct |
2074835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 2070403 - 2070347
Alignment:
| Q |
320 |
cctggaatccgatctcgataacagcaacccaagagcaataactgtggaggattactc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| |
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|
| T |
2070403 |
cctggaatccgatctcgataacagcaacccaaaagcaacaacggtggagggttactc |
2070347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 2074749 - 2074693
Alignment:
| Q |
320 |
cctggaatccgatctcgataacagcaacccaagagcaataactgtggaggattactc |
376 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |||||| |
|
|
| T |
2074749 |
cctggaatccgatctcgataactgcaacccaaaagcaacaacggtggagggttactc |
2074693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 2077092 - 2077050
Alignment:
| Q |
19 |
aacgaaatggacaagtctatatgagtcggacccaacacaatta |
61 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
2077092 |
aacgaaatggacaagtctagatgagccggacccaacacaatta |
2077050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 49 - 273
Target Start/End: Original strand, 9911135 - 9911354
Alignment:
| Q |
49 |
cccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagctcctaataccaccacaagtaccacccaaaga |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||| ||| ||||||||||||||||||| ||||||| |
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|
| T |
9911135 |
cccaacacaattacctcccaatacagtcacctctcgaaaattaaaaacacaacaaaataaactctaaggtcccaataccaccacaagtacca-ccaaaga |
9911233 |
T |
|
| Q |
149 |
gaataaatttcctcaaaagtaaacttca-ac-tgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatggaaa |
246 |
Q |
| |
|
||||||||| |||||||| |||| |||| || || ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| | |
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|
| T |
9911234 |
gaataaattccctcaaaa-taaa-ttcacacatggatcaaaagacaacaaaataaactcccaata----cccatcataataacctcccaaaaaatggaga |
9911327 |
T |
|
| Q |
247 |
acacaatatgactaaaataccatccaa |
273 |
Q |
| |
|
||| |||| ||| ||||||||||||| |
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|
| T |
9911328 |
acataataggacccaaataccatccaa |
9911354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 23636144 - 23636292
Alignment:
| Q |
174 |
tcaactgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatggaaaacacaatatgactaaaataccatccaa |
273 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| |
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|
| T |
23636144 |
tcaactgcatcaaaagacagcaaaataaactcccaataccaccccatcgcaataacctcccaaaaaatggaaaatgcaataggacccaaataccatccaa |
23636243 |
T |
|
| Q |
274 |
gctcaacaccttcaaagtacgtacaaacagagcacgacaccttgatcct |
322 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
23636244 |
actcaacaccttcaaaatacgtacaaacagatcacgacaccttgatcct |
23636292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 23636378 - 23636410
Alignment:
| Q |
320 |
cctggaatccgatctcgataacagcaacccaag |
352 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
23636378 |
cctggaatacgatctcgataacagcaacccaag |
23636410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 24718509 - 24718623
Alignment:
| Q |
65 |
cccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagctcctaataccaccacaagtaccacccaaagagaataaatttcctcaa |
164 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
24718509 |
cccaacacagtcacctcccgaaaattgaaaacacaactgaataaactctaagctcccaataccaccacaagtacca-ccaacgagaataaatttcctcaa |
24718607 |
T |
|
| Q |
165 |
aagtaaacttcaactg |
180 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
24718608 |
aagtaaacatcaactg |
24718623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 24718621 - 24718676
Alignment:
| Q |
321 |
ctggaatccgatctcgataacagcaacccaagagcaataactgtggaggattactc |
376 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
24718621 |
ctggaatccgatcacgataacaacaacccaagagcaacaagcgtggaggattactc |
24718676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 24718470 - 24718517
Alignment:
| Q |
11 |
cacagaacaacgaaatggacaagtctata-tgagtcggacccaacaca |
57 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
24718470 |
cacaaaacaacgaaatagacaagtctatattgagtcggacccaacaca |
24718517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 43032142 - 43032103
Alignment:
| Q |
22 |
gaaatggacaagtctatatgagtcggacccaacacaatta |
61 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
43032142 |
gaaatggacaagtctagatgagccggacccaacacaatta |
43032103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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