View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_high_20 (Length: 269)
Name: NF11923_high_20
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 29519135 - 29518896
Alignment:
| Q |
19 |
ataggcttggagacagcacgagtcttggctctccgaaaggcgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatac |
118 |
Q |
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| T |
29519135 |
ataggcttggagacagcacgagtcttggctctccgaaaggtgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatac |
29519036 |
T |
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| Q |
119 |
tccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatct |
218 |
Q |
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| T |
29519035 |
tacaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatct |
29518936 |
T |
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| Q |
219 |
tcctctcaacatcttaatgtatgttcatcatcctcttctt |
258 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
29518935 |
tcctctcaacatcttaatgtatgttgatcatcctcttctt |
29518896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 40100888 - 40101112
Alignment:
| Q |
19 |
ataggcttggagacagcacgagtcttggctctccgaaaggcgcatgtcatcatcgccgcaagaaacatggagtctgcaaaggaagctaaacaaattatac |
118 |
Q |
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||||| ||||||||| || |||| |||||||| | |||| ||||| ||||| || ||||||||||| || |||||| ||||||| |||||| ||| |
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| T |
40100888 |
atagggttggagacaacaagagtgttggctcttaggaaggtccatgttatcattgctgcaagaaacattgaatctgcagaggaagccaaacaacaaataa |
40100987 |
T |
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| Q |
119 |
tccaagacaacgagtctgctcgagttgacataatgaagctcgacctttgttcagtgaagtctgttagatcgtttgttgaaaacttcctcgctctcgatct |
218 |
Q |
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||||| ||| | ||||| ||||| ||||||||||| || ||||| || ||| |||||||| |||| || || || |||||| | ||||| ||||| |
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| T |
40100988 |
cacaagagaacaaatctgcacgagtggacataatgaaacttgacctatgctcaacaaagtctgtccgatcattcgtcgacaacttcattgctcttgatct |
40101087 |
T |
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| Q |
219 |
tcctctcaacatcttaatgtatgtt |
243 |
Q |
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|||||||||||||||||||| |||| |
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| T |
40101088 |
tcctctcaacatcttaatgtttgtt |
40101112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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