View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_high_22 (Length: 252)

Name: NF11923_high_22
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_high_22
NF11923_high_22
[»] chr6 (3 HSPs)
chr6 (35-195)||(2594036-2594197)
chr6 (88-252)||(2635850-2636014)
chr6 (187-252)||(2593786-2593851)
[»] scaffold0103 (1 HSPs)
scaffold0103 (88-252)||(3995-4159)
[»] chr8 (1 HSPs)
chr8 (94-250)||(18405932-18406084)
[»] chr1 (1 HSPs)
chr1 (94-250)||(49551736-49551888)
[»] chr4 (1 HSPs)
chr4 (94-193)||(9817334-9817431)
[»] chr3 (2 HSPs)
chr3 (94-193)||(8519368-8519465)
chr3 (94-193)||(18452454-18452551)
[»] chr2 (1 HSPs)
chr2 (94-193)||(19097097-19097194)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 2594197 - 2594036
Alignment:
Q  35 ttgaaagtattaaacttgaacaatatatttttcaatgtgtttcaacgcggaaatatattttttgttattttgctaggcttttacttggaagtattaaatt 134  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  2594197 ttgaaagtattaaacttgaacaatataattttcaatgtgtttcaacgctgaaatatattttttgttattttgctaggcttgtacttggaagtattaaatc 2594098  T
Q  135 tagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaactta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2594097 tagtattaaataatgttagacattatgtttactagtatgtgttaaattaatgtttgaactta 2594036  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 2636014 - 2635850
Alignment:
Q  88 tatattttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgt 186  Q
    ||||||||||||||||||  |||| || |||||  ||||||| ||  |||||||||||||||||||||||| ||||||||| ||||||||||||| || |    
T  2636014 tatattttttgttatttttttaggtttatacttcaaagtatttaacctagtattaaataatgttagacattttgtttactactatgtgttaaattaattt 2635915  T
Q  187 ttgaacttaacatttttgtaatacaacttttgtggatgtgtggttaaattagatcttgtttgagat 252  Q
     |||||||||| || |||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  2635914 gtgaacttaactttattgtaatacaac-tttgtggatgtgtgcttaaattagatcttgtttaagat 2635850  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 2593851 - 2593786
Alignment:
Q  187 ttgaacttaacatttttgtaatacaacttttgtggatgtgtggttaaattagatcttgtttgagat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593851 ttgaacttaacatttttgtaatacaacttttgtggatgtgtggttaaattagatcttgtttgagat 2593786  T

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Target: scaffold0103 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 3995 - 4159
Alignment:
Q  88 tatattttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgt 186  Q
    ||||||||||||||||||  |||| || |||||  ||||||| ||  |||||||||||||||||||||||| ||||||||| ||||||||||||| || |    
T  3995 tatattttttgttatttttttaggtttatacttcaaagtatttaacctagtattaaataatgttagacattttgtttactactatgtgttaaattaattt 4094  T
Q  187 ttgaacttaacatttttgtaatacaacttttgtggatgtgtggttaaattagatcttgtttgagat 252  Q
     |||||||||| || |||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  4095 gtgaacttaactttattgtaatacaac-tttgtggatgtgtgcttaaattagatcttgtttaagat 4159  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 18405932 - 18406084
Alignment:
Q  94 ttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaac 192  Q
    ||||||||||||||||||||| ||||| ||||||||||| |   ||| || ||||||| |||||| || |||||| ||||| || |||| ||||||||||    
T  18405932 ttttgttattttgctaggcttatacttcgaagtattaaact---tatcaagtaatgtttgacattttgattactattatgtcttgaattaatgtttgaac 18406028  T
Q  193 ttaacatttttgtaatacaacttttgtggatgtgtggttaaattagatcttgtttgag 250  Q
    |  |  || || || |||| ||||||||| ||| | | |||||| |||||||||||||    
T  18406029 t--attttattatattacatcttttgtggttgtattgctaaattcgatcttgtttgag 18406084  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 49551736 - 49551888
Alignment:
Q  94 ttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaac 192  Q
    ||||||||||||||||||||| ||||| |||| |||||| |   ||| || ||||||| |||||| || |||||| ||||| || |||| ||||||||||    
T  49551736 ttttgttattttgctaggcttatacttcgaagcattaaact---tatcaagtaatgtttgacattttgattactattatgtcttgaattaatgtttgaac 49551832  T
Q  193 ttaacatttttgtaatacaacttttgtggatgtgtggttaaattagatcttgtttgag 250  Q
    |  |  || || || |||| | ||||||| ||| | |||||||| |||||||||||||    
T  49551833 t--atgttattatattacaccctttgtggttgtattgttaaattcgatcttgtttgag 49551888  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 9817431 - 9817334
Alignment:
Q  94 ttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaac 192  Q
    ||||||||||||||||||||| ||||| |||| |||||| |   ||| || ||||||| |||||| || |||||| ||||| || |||| ||||||||||    
T  9817431 ttttgttattttgctaggcttatacttcgaagcattaaact---tatcaagtaatgtttgacattttgattactattatgtcttgaattaatgtttgaac 9817335  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 8519465 - 8519368
Alignment:
Q  94 ttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaac 192  Q
    ||||||||||||||||||||| ||||| |||| |||||| |   ||| || ||||||| |||||| || |||||| ||||| || |||| ||||||||||    
T  8519465 ttttgttattttgctaggcttatacttcgaagcattaaact---tatcaagtaatgtttgacattttgattactattatgtcttgaattaatgtttgaac 8519369  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 18452454 - 18452551
Alignment:
Q  94 ttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaac 192  Q
    ||||||||||||||||||||| ||||| |||| |||||| |   ||| || ||||||| |||||| || |||||| ||||| || |||| ||||||||||    
T  18452454 ttttgttattttgctaggcttatacttcgaagcattaaact---tatcaagtaatgtttgacattttgattactattatgtcttgaattaatgtttgaac 18452550  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 19097194 - 19097097
Alignment:
Q  94 ttttgttattttgctaggcttttacttggaagtattaaatttagtattaaataatgttagacattatgtttactagtatgtgttaaatt-atgtttgaac 192  Q
    ||||||||||||||||||||| ||||| |||| |||||| |   ||| || ||||||| |||||| || |||||| ||||| || |||| ||||||||||    
T  19097194 ttttgttattttgctaggcttatacttcgaagcattaaact---tatcaagtaatgtttgacattttgattactattatgtattgaattaatgtttgaac 19097098  T

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