View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_high_3 (Length: 574)

Name: NF11923_high_3
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_high_3
NF11923_high_3
[»] chr6 (9 HSPs)
chr6 (17-566)||(4046562-4047111)
chr6 (317-422)||(14936467-14936572)
chr6 (317-439)||(6330113-6330235)
chr6 (317-422)||(5685354-5685459)
chr6 (337-422)||(6068970-6069055)
chr6 (317-437)||(2830335-2830455)
chr6 (317-437)||(8382979-8383099)
chr6 (317-437)||(11572155-11572275)
chr6 (317-437)||(26602323-26602443)
[»] chr2 (15 HSPs)
chr2 (317-422)||(23227282-23227387)
chr2 (317-404)||(13724112-13724199)
chr2 (325-401)||(40713978-40714054)
chr2 (317-438)||(37666620-37666741)
chr2 (317-437)||(3055558-3055678)
chr2 (317-437)||(13197720-13197840)
chr2 (393-437)||(15258791-15258835)
chr2 (317-437)||(15372226-15372346)
chr2 (317-437)||(15896842-15896962)
chr2 (317-437)||(16044327-16044447)
chr2 (341-405)||(31469095-31469159)
chr2 (317-437)||(37990023-37990143)
chr2 (317-437)||(41478649-41478769)
chr2 (317-437)||(44397547-44397667)
chr2 (317-437)||(44398686-44398806)
[»] chr4 (12 HSPs)
chr4 (332-426)||(31013032-31013126)
chr4 (319-437)||(1716301-1716417)
chr4 (341-440)||(44900077-44900176)
chr4 (317-437)||(3904693-3904813)
chr4 (317-437)||(47838627-47838747)
chr4 (317-437)||(48336263-48336383)
chr4 (317-437)||(3372121-3372241)
chr4 (391-439)||(4780379-4780427)
chr4 (317-437)||(5986876-5986996)
chr4 (317-361)||(42797808-42797852)
chr4 (317-437)||(43900549-43900669)
chr4 (317-437)||(47833611-47833731)
[»] chr7 (7 HSPs)
chr7 (317-437)||(28469481-28469601)
chr7 (317-437)||(7482225-7482345)
chr7 (317-437)||(1738457-1738577)
chr7 (317-437)||(7240749-7240869)
chr7 (317-437)||(38063923-38064043)
chr7 (317-437)||(38441460-38441580)
chr7 (317-437)||(46840860-46840980)
[»] chr3 (18 HSPs)
chr3 (321-423)||(53275309-53275411)
chr3 (337-437)||(9213516-9213616)
chr3 (317-440)||(37508918-37509041)
chr3 (317-437)||(17653712-17653832)
chr3 (317-437)||(46208030-46208150)
chr3 (322-405)||(50989505-50989589)
chr3 (322-405)||(51092637-51092721)
chr3 (317-422)||(9111504-9111609)
chr3 (317-437)||(4238594-4238714)
chr3 (393-437)||(5237540-5237584)
chr3 (317-437)||(10297979-10298099)
chr3 (317-437)||(19557062-19557182)
chr3 (317-361)||(21295336-21295380)
chr3 (317-437)||(22721931-22722051)
chr3 (317-437)||(34080040-34080160)
chr3 (321-445)||(44785410-44785534)
chr3 (317-437)||(49823391-49823511)
chr3 (317-437)||(51406673-51406793)
[»] scaffold0171 (1 HSPs)
scaffold0171 (324-441)||(12370-12487)
[»] chr5 (5 HSPs)
chr5 (348-441)||(27080981-27081074)
chr5 (317-437)||(36563548-36563668)
chr5 (318-437)||(11795168-11795287)
chr5 (317-437)||(9395350-9395470)
chr5 (339-439)||(11574112-11574212)
[»] scaffold0204 (1 HSPs)
scaffold0204 (317-437)||(23785-23905)
[»] scaffold0009 (1 HSPs)
scaffold0009 (317-437)||(49505-49625)
[»] chr8 (12 HSPs)
chr8 (317-437)||(3304288-3304408)
chr8 (317-437)||(12763664-12763784)
chr8 (317-436)||(30171483-30171602)
chr8 (317-438)||(31654612-31654733)
chr8 (317-437)||(54622-54742)
chr8 (317-437)||(2890172-2890292)
chr8 (317-437)||(6552655-6552775)
chr8 (317-437)||(7785788-7785908)
chr8 (317-437)||(12343150-12343270)
chr8 (317-437)||(25601010-25601130)
chr8 (317-437)||(32114485-32114605)
chr8 (317-437)||(43199364-43199484)
[»] scaffold0650 (1 HSPs)
scaffold0650 (342-405)||(20-83)
[»] scaffold0464 (1 HSPs)
scaffold0464 (317-439)||(6141-6263)
[»] chr1 (7 HSPs)
chr1 (317-439)||(39401976-39402098)
chr1 (317-437)||(9981647-9981767)
chr1 (317-437)||(11897054-11897174)
chr1 (317-437)||(27159368-27159488)
chr1 (317-437)||(31842805-31842925)
chr1 (317-437)||(44668103-44668223)
chr1 (317-361)||(44955216-44955260)
[»] scaffold0017 (1 HSPs)
scaffold0017 (337-430)||(30037-30130)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 4046562 - 4047111
Alignment:
Q  17 ataatcaactccagaattaaattgtaagtgctcataattgatatagatacatatcatgttctcgaagtttacaattaaattgctagtgctcataaggtgt 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4046562 ataatcaactccagaattaaattgtaaatgctcataattgatatagatacatatcatgttcttgaagtttacaattaaattgctagtgctcataaggtgt 4046661  T
Q  117 ttgtaattgattgacaatgtaaaaagatgaacattgattgtgcatcaaaactaatcactaagtttaataactatacataaatagtataatcacatttcat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046662 ttgtaattgattgacaatgtaaaaagatgaacattgattgtgcatcaaaactaatcactaagtttaataactatacataaatagtataatcacatttcat 4046761  T
Q  217 tatattggtacatcacaatgttacttctcaaaaccaattgacactaagattatgaaatatgtttggacatatgcataannnnnnnacaataatattcgca 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||       ||||||||| |||||    
T  4046762 tatattggtacatcacaatgttacttctcaaaactaattgacactaagattatgaaatatgtttgtacatatgcataatttttttacaataatactcgca 4046861  T
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    | |||||||||||||||| ||||| ||||||||||||  || |||||   ||| ||||||||| ||||||||||| |||||| |||||||||||||||||    
T  4046862 gatcctatttataaggaatttttaagtcaacaaaagaaaatatatttaaataaaaatttggattaaatatatcgatttttgtagaccaaaacgtctttta 4046961  T
Q  417 taaataagatcggagggagtagttaccatactcgaaaattgttgacatacaaataacatggtacctttttcttccatttgtgtattctctttccaacggc 516  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046962 taaataagatcagagggagtagttaccatactcgaaaattgttgacatacaaataacatggtacctttttcttccatttgtgtattctctttccaacggc 4047061  T
Q  517 aatcaatgacatatatggcaactttttcaccagtcaatacattctctgct 566  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4047062 aatcaatgagatatatggcaactttttcaccagtcaatacattctctgct 4047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 14936467 - 14936572
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||| || ||| ||| |||||||||||||||| |||||||| | | ||||||||||   |||||| ||| ||| ||||||||| |||  ||| |||    
T  14936467 ggtcctatatagaagaaacatttaggtcaacaaaaggtgatgtatctagttaagaatttgttccaaatacatcaactattgttgacccaaatatctctta 14936566  T
Q  417 taaata 422  Q
    ||||||    
T  14936567 taaata 14936572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 439
Target Start/End: Complemental strand, 6330235 - 6330113
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  6330235 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 6330136  T
Q  417 taaataagatcggagggagtagt 439  Q
    |||||| || |||||| ||||||    
T  6330135 taaataggaccggaggtagtagt 6330113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 422
Target Start/End: Complemental strand, 5685459 - 5685354
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||| |||||||||| ||| ||| ||||| ||||| ||||||||  | | ||| |||||||  |||||| ||| ||||||||||||| ||| || |||||    
T  5685459 ggtcttatttataagaaacatttgggtcagcaaaatatgatgtaacttgttaataatttggtccaaatacatcaacttttgttgacccaaatgtttttta 5685360  T
Q  417 taaata 422  Q
    | ||||    
T  5685359 ttaata 5685354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 6068970 - 6069055
Alignment:
Q  337 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaata 422  Q
    |||||||||||||||||||| ||||   | ||| ||||| || |||||| ||  ||||||||||||| |||  |||||||||||||    
T  6068970 tttaggtcaacaaaagatgaagtatcgagttaaaaatttagaccaaatacattaacttttgttgacctaaatatcttttataaata 6069055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 2830455 - 2830335
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  2830455 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 2830356  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  2830355 taaataggaccggaggtagta 2830335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 8382979 - 8383099
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  8382979 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 8383078  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  8383079 taaataggaccggaggtagta 8383099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 11572155 - 11572275
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  11572155 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 11572254  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  11572255 taaataggaccggaggtagta 11572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 26602443 - 26602323
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  26602443 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 26602344  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  26602343 taaataggaccggaggtagta 26602323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 23227282 - 23227387
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||| |||||||||| ||  |||||||||||||||  |||||||| || ||||||||||||| |||||| ||| ||||||||||||||||| |||| |||    
T  23227282 ggtcatatttataagaaatatttaggtcaacaaaatgtgatgtatctgactaagaatttggaccaaatacatcaacttttgttgaccaaaatgtctctta 23227381  T
Q  417 taaata 422  Q
    ||||||    
T  23227382 taaata 23227387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 404
Target Start/End: Original strand, 13724112 - 13724199
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgacca 404  Q
    ||||||||||| |||  || | |||||||||||||| |||||||||||| ||| || ||||| || ||| ||| ||||||||||||||    
T  13724112 ggtcctatttacaagagacatctaggtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgacca 13724199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 40714054 - 40713978
Alignment:
Q  325 ttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttga 401  Q
    |||||||  |||| |||||||||||||| |||||||||||| | | ||| |||| |||||| |||||||||| ||||    
T  40714054 ttataagagacttgtaggtcaacaaaagttgatgtatttggttcataatatggaccaaatacatcgacttttattga 40713978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 37666620 - 37666741
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| ||||||| |||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  37666620 ggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 37666719  T
Q  417 taaataagatcggagggagtag 438  Q
    |||||| || |||||| |||||    
T  37666720 taaataggaccggaggtagtag 37666741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 3055678 - 3055558
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3055678 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3055579  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  3055578 taaataggaccggaggtagta 3055558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 13197720 - 13197840
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  13197720 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 13197819  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  13197820 taaataggaccggaggtagta 13197840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 15258835 - 15258791
Alignment:
Q  393 ttttgttgaccaaaacgtcttttataaataagatcggagggagta 437  Q
    ||||||||||  |||||||||| |||||||||||||||| |||||    
T  15258835 ttttgttgactcaaacgtctttaataaataagatcggagagagta 15258791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 15372346 - 15372226
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  15372346 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctcgttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 15372247  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| ||  ||||||||||    
T  15372246 taaataggactggagggagta 15372226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 15896962 - 15896842
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  15896962 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 15896863  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  15896862 taaataggaccggaggtagta 15896842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 16044327 - 16044447
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| ||||||| |||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  16044327 ggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 16044426  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  16044427 taaataggaccggaggtagta 16044447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 31469095 - 31469159
Alignment:
Q  341 ggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaa 405  Q
    |||||||||||| | |||||||||| ||| |||||| |||||||| ||  ||||| |||||||||    
T  31469095 ggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaa 31469159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 37990023 - 37990143
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  37990023 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 37990122  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  37990123 taaataggaccggaggtagta 37990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 41478649 - 41478769
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  41478649 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 41478748  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  41478749 taaataggaccggaggtagta 41478769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 44397667 - 44397547
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  44397667 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 44397568  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  44397567 taaataggaccggaggtagta 44397547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 44398806 - 44398686
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  44398806 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 44398707  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  44398706 taaataggaccggaggtagta 44398686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 426
Target Start/End: Complemental strand, 31013126 - 31013032
Alignment:
Q  332 gaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagat 426  Q
    |||| ||||||||||||||||||||||||| | | |||||||||  | |||||| ||| ||||||||||| | ||| ||||||||||||||||||    
T  31013126 gaacatttaggtcaacaaaagatgatgtatctagttaagaatttaaaccaaatacatctacttttgttgatctaaatgtcttttataaataagat 31013032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 437
Target Start/End: Complemental strand, 1716417 - 1716301
Alignment:
Q  319 tcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttata 418  Q
    |||||||||||||  |  ||||||||||| |||| ||||| || ||| ||| |  |||||||| ||| ||| ||||||||||||||||   ||| |||||    
T  1716417 tcctatttataagagaagtttaggtcaaccaaagttgatgcatctggttaaaa--ttggatcagatacatcaacttttgttgaccaaattatctcttata 1716320  T
Q  419 aataagatcggagggagta 437  Q
    ||||||| |||||||||||    
T  1716319 aataagaccggagggagta 1716301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 440
Target Start/End: Complemental strand, 44900176 - 44900077
Alignment:
Q  341 ggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagtt 440  Q
    |||||||||||| ||| |||| ||| |||  | ||||| || ||||||| |||||||||||||| ||  ||| ||||||||| || ||||||||||||||    
T  44900176 ggtcaacaaaagttgacgtatctggttaaacaattggaccagatatatcaacttttgttgaccagaatatctcttataaataggaccggagggagtagtt 44900077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 3904693 - 3904813
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||  |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| |||  |||||||    
T  3904693 ggtcctatttataagagaattttgggtcaacaaaaattgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctttta 3904792  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  3904793 taaataggaccggaggtagta 3904813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 47838627 - 47838747
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  47838627 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgaccgaaatttctctta 47838726  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| ||||||||| ||||    
T  47838727 taaataggatcggaggtagta 47838747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 48336383 - 48336263
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  48336383 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 48336284  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  48336283 taaataggaccggaggtagta 48336263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 3372241 - 3372121
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3372241 ggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3372142  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  3372141 taaataggaccggaggtagta 3372121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 4780379 - 4780427
Alignment:
Q  391 acttttgttgaccaaaacgtcttttataaataagatcggagggagtagt 439  Q
    |||||||||||||||||  ||| ||||||||| || |||||||||||||    
T  4780379 acttttgttgaccaaaatttctcttataaataggaccggagggagtagt 4780427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 5986996 - 5986876
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| | |  ||| |||    
T  5986996 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctatatttctctta 5986897  T
Q  417 taaataagatcggagggagta 437  Q
    ||||||  |||||||| ||||    
T  5986896 taaatagaatcggaggtagta 5986876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 42797852 - 42797808
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtat 361  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||    
T  42797852 ggtcctatttataagagaattttaggtcaacaaaagttgatgtat 42797808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 43900669 - 43900549
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| ||| |||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  43900669 ggtcctatttataagagaattttgggttaacaaaagttgatgtatctagttaaaaattcagtccaaatacatttacttttgttgacctaaatttctctta 43900570  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||||||||    
T  43900569 taaataggaccggagggagta 43900549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 47833731 - 47833611
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  47833731 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 47833632  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  47833631 taaataggaccggaggtagta 47833611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 28469601 - 28469481
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||| |||||||||| | | |||||||||| ||||  |||||||| ||  ||| |||||||| |  ||| ||  ||||||||||||| ||| ||||||||    
T  28469601 ggtcatatttataagaatcatttaggtcaataaaatgtgatgtatctgattaataatttggacctgatacattaacttttgttgacctaaatgtctttta 28469502  T
Q  417 taaataagatcggagggagta 437  Q
    |||||||||||| ||||||||    
T  28469501 taaataagatcgaagggagta 28469481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 7482345 - 7482225
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  7482345 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 7482246  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  7482245 taaataggaccggaggtagta 7482225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 1738457 - 1738577
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  1738457 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 1738556  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  1738557 taaataggaccggaggtagta 1738577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 7240869 - 7240749
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  7240869 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 7240770  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  7240769 taaataggaccggaggtagta 7240749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 38063923 - 38064043
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  38063923 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 38064022  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  38064023 taaataggaccggaggtagta 38064043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 38441580 - 38441460
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||  |||  ||| |||    
T  38441580 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacataaatttctctta 38441481  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  38441480 taaataggaccggaggtagta 38441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 46840980 - 46840860
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  46840980 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 46840881  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  46840880 taaataggaccggaggtagta 46840860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 423
Target Start/End: Complemental strand, 53275411 - 53275309
Alignment:
Q  321 ctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaa 420  Q
    ||||||||||| ||  || |||||||||||| ||||||||| |   ||||||||||||| ||||| ||| | ||||||||||| |||  |||||||||||    
T  53275411 ctatttataagaaatattaaggtcaacaaaatatgatgtatctaattaagaatttggattaaatacatcaatttttgttgacccaaatatcttttataaa 53275312  T
Q  421 taa 423  Q
    |||    
T  53275311 taa 53275309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 437
Target Start/End: Complemental strand, 9213616 - 9213516
Alignment:
Q  337 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagt 436  Q
    |||||||||||||||  |||||||||||| ||  || || |  || ||| ||| |||||||||||| |||| |||||||||||||| || ||||||||||    
T  9213616 tttaggtcaacaaaaattgatgtatttggttataaaattagtccagatacatcaacttttgttgactaaaatgtcttttataaataggaccggagggagt 9213517  T
Q  437 a 437  Q
    |    
T  9213516 a 9213516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 440
Target Start/End: Complemental strand, 37509041 - 37508918
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  37509041 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 37508942  T
Q  417 taaataagatcggagggagtagtt 440  Q
    |||||| || ||||||||||||||    
T  37508941 taaataggaccggagggagtagtt 37508918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 17653832 - 17653712
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  17653832 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 17653733  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||||||||    
T  17653732 taaataggaccggagggagta 17653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 46208150 - 46208030
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | ||||||||||||||||| |||||||| |   ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  46208150 ggtcctatttataagagaattttaggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 46208051  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||||||||    
T  46208050 taaataggaccggagggagta 46208030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 50989589 - 50989505
Alignment:
Q  322 tatttataaggaacttttaggtcaacaaaagatgatgta-tttggctaagaatttggatcaaatatatcgacttttgttgaccaa 405  Q
    |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||||| |  ||||||||  |||||| ||||||||    
T  50989589 tatttataagaaatttttatgtcaataaaagatgatgtattttggttaagaatttgaactaaatatattaacttttcttgaccaa 50989505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 51092721 - 51092637
Alignment:
Q  322 tatttataaggaacttttaggtcaacaaaagatgatgta-tttggctaagaatttggatcaaatatatcgacttttgttgaccaa 405  Q
    |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||||| |  ||||||||  |||||| ||||||||    
T  51092721 tatttataagaaatttttatgtcaataaaagatgatgtattttggttaagaatttgaactaaatatattaacttttcttgaccaa 51092637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 9111504 - 9111609
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  | ||||||| ||  ||||||||||||| |||  ||| |||    
T  9111504 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctctta 9111603  T
Q  417 taaata 422  Q
    ||||||    
T  9111604 taaata 9111609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 4238714 - 4238594
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  4238714 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 4238615  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  4238614 taaataggaccggaggtagta 4238594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 5237584 - 5237540
Alignment:
Q  393 ttttgttgaccaaaacgtcttttataaataagatcggagggagta 437  Q
    |||||||||  |||||||||||||||||||||||| || ||||||    
T  5237584 ttttgttgaaaaaaacgtcttttataaataagatcagaaggagta 5237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 10298099 - 10297979
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  10298099 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 10298000  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  10297999 taaataggaccggaggtagta 10297979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 19557062 - 19557182
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  19557062 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 19557161  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  19557162 taaataggaccggaggtagta 19557182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 21295336 - 21295380
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtat 361  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||    
T  21295336 ggtcctatttataagagaattttaggtcaacaaaagttgatgtat 21295380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 22722051 - 22721931
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  22722051 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 22721952  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  22721951 taaataggaccggaggtagta 22721931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 34080040 - 34080160
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  34080040 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatcttgttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 34080139  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  34080140 taaataggaccggaggtagta 34080160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 44785410 - 44785534
Alignment:
Q  321 ctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaa 420  Q
    |||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||||||    
T  44785410 ctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaa 44785509  T
Q  421 taagatcggagggagtagttaccat 445  Q
    || || |||||| |||| |||||||    
T  44785510 taggaccggaggtagtatttaccat 44785534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 49823391 - 49823511
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  49823391 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 49823490  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  49823491 taaataggaccggaggtagta 49823511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 51406793 - 51406673
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||  |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  51406793 ggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 51406694  T
Q  417 taaataagatcggagggagta 437  Q
    ||||||||| |||||| ||||    
T  51406693 taaataagaccggaggtagta 51406673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 441
Target Start/End: Original strand, 12370 - 12487
Alignment:
Q  324 tttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataa 423  Q
    |||||||| ||| || ||||||||||||  |||||||| ||| ||||||||| || |||| | | | |||||| ||||||||||  ||| |||||||||     
T  12370 tttataagaaacattcaggtcaacaaaatgtgatgtatctggttaagaatttagaccaaacacaccaactttttttgaccaaaatatctcttataaatag 12469  T
Q  424 gatcggagggagtagtta 441  Q
    || |||||||| ||||||    
T  12470 gaccggagggaatagtta 12487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 441
Target Start/End: Original strand, 27080981 - 27081074
Alignment:
Q  348 aaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtagtta 441  Q
    |||||||||| ||||||  ||| ||||| ||| ||||| ||| ||||||||||||| ||| |||| || |||||| |||||||  |||||||||    
T  27080981 aaaagatgatttatttgattaaaaatttagattaaatacatcaacttttgttgacctaaatgtctcttgtaaataggatcggaaagagtagtta 27081074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 36563548 - 36563668
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  36563548 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 36563647  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| ||||||||| ||||    
T  36563648 taaataggatcggaggtagta 36563668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 437
Target Start/End: Complemental strand, 11795287 - 11795168
Alignment:
Q  318 gtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttat 417  Q
    ||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| ||||    
T  11795287 gtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttat 11795188  T
Q  418 aaataagatcggagggagta 437  Q
    ||||| ||||||||| ||||    
T  11795187 aaataggatcggaggtagta 11795168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 9395470 - 9395350
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  9395470 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 9395371  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  9395370 taaataggaccggaggtagta 9395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 11574112 - 11574212
Alignment:
Q  339 taggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcggagggagtag 438  Q
    |||||||||||||| | |||||| | | ||| || ||||| || |||| || | ||||||||||| ||| |||| ||||||||| || ||||| ||||||    
T  11574112 taggtcaacaaaagttaatgtatctagttaacaaattggaccagatatttcaatttttgttgacctaaatgtctcttataaataggaccggagagagtag 11574211  T
Q  439 t 439  Q
    |    
T  11574212 t 11574212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 23905 - 23785
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  23905 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 23806  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  23805 taaataggaccggaggtagta 23785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 49625 - 49505
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||||| | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  49625 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 49526  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  49525 taaataggaccggaggtagta 49505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 3304288 - 3304408
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  3304288 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 3304387  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  3304388 taaataggaccggaggtagta 3304408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 12763664 - 12763784
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  12763664 ggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 12763763  T
Q  417 taaataagatcggagggagta 437  Q
    ||||||||| |||||| ||||    
T  12763764 taaataagaccggaggtagta 12763784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 436
Target Start/End: Complemental strand, 30171602 - 30171483
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||| ||||||||| ||| |||| ||||||||||   ||||||| ||  |||||||||||| ||| || ||  ||||||||||||  |||  ||| ||     
T  30171602 ggtcccatttataagaaacatttaagtcaacaaaatgcgatgtatctgattaagaatttggaccaagtacattaacttttgttgactcaaaattctcttg 30171503  T
Q  417 taaataagatcggagggagt 436  Q
    |||||| |||||||||||||    
T  30171502 taaataggatcggagggagt 30171483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 438
Target Start/End: Complemental strand, 31654733 - 31654612
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||||||||||||   | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  31654733 ggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 31654634  T
Q  417 taaataagatcggagggagtag 438  Q
    |||||| || ||||||||||||    
T  31654633 taaataggaccggagggagtag 31654612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 54622 - 54742
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  54622 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 54721  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  54722 taaataggaccggaggtagta 54742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 2890172 - 2890292
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  2890172 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 2890271  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  2890272 taaataggaccggaggtagta 2890292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 6552775 - 6552655
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  6552775 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 6552676  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  6552675 taaataggaccggaggtagta 6552655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 7785788 - 7785908
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  7785788 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 7785887  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  7785888 taaataggaccggaggtagta 7785908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 12343150 - 12343270
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  12343150 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 12343249  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  12343250 taaataggaccggaggtagta 12343270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 25601010 - 25601130
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| | |||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  25601010 ggtcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 25601109  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| ||||||||| ||||    
T  25601110 taaataggatcggaggtagta 25601130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 32114485 - 32114605
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||||||||||||| || |||| |||||||||||  |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  32114485 ggtcctatttataagaaaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 32114584  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  32114585 taaataggaccggaggtagta 32114605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 43199364 - 43199484
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  43199364 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 43199463  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  43199464 taaataggaccggaggtagta 43199484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Original strand, 20 - 83
Alignment:
Q  342 gtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaa 405  Q
    ||||||||||| |||||||||||| ||| ||||| |  |||||| ||| |||||||||||||||    
T  20 gtcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgaccaa 83  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 439
Target Start/End: Original strand, 6141 - 6263
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    ||||||||||||||| || |||| |||||||||||| |||||||| | | ||| ||||  |  || ||| ||  ||||||||||||| |||  ||| |||    
T  6141 ggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccacatacattcacttttgttgacctaaatttctctta 6240  T
Q  417 taaataagatcggagggagtagt 439  Q
    |||||| || |||||| ||||||    
T  6241 taaataggaccggaggtagtagt 6263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 439
Target Start/End: Original strand, 39401976 - 39402098
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  39401976 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 39402075  T
Q  417 taaataagatcggagggagtagt 439  Q
    |||||| || |||||| ||||||    
T  39402076 taaataggaccggaggtagtagt 39402098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 9981767 - 9981647
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  9981767 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 9981668  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  9981667 taaataggaccggaggtagta 9981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 11897174 - 11897054
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  |  ||| |||||||||||| ||||||||  || ||| ||||  | ||| ||| ||| ||||||||||||| ||   ||| |||    
T  11897174 ggtcctatttataagagaaatttgggtcaacaaaagttgatgtatccggttaaaaattcagttcagatacatcaacttttgttgacctaactttctctta 11897075  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||||||||    
T  11897074 taaataggaccggagggagta 11897054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 27159368 - 27159488
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  27159368 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 27159467  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  27159468 taaataggaccggaggtagta 27159488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 31842805 - 31842925
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  31842805 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 31842904  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  31842905 taaataggaccggaggtagta 31842925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 437
Target Start/End: Original strand, 44668103 - 44668223
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtctttta 416  Q
    |||||||||||||||  | |||| |||||||||||| |||||||| | | ||| ||||  |  |||||| ||  ||||||||||||| |||  ||| |||    
T  44668103 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctctta 44668202  T
Q  417 taaataagatcggagggagta 437  Q
    |||||| || |||||| ||||    
T  44668203 taaataggaccggaggtagta 44668223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 44955216 - 44955260
Alignment:
Q  317 ggtcctatttataaggaacttttaggtcaacaaaagatgatgtat 361  Q
    |||||||||||||||  | ||||||||||||||||| ||||||||    
T  44955216 ggtcctatttataagagaattttaggtcaacaaaagttgatgtat 44955260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 30037 - 30130
Alignment:
Q  337 tttaggtcaacaaaagatgatgtatttggctaagaatttggatcaaatatatcgacttttgttgaccaaaacgtcttttataaataagatcgga 430  Q
    |||| ||||| |||||||||||||| | | ||||||||| || |||||| ||| ||||||||| |   ||| |||| ||||||||| |||||||    
T  30037 tttatgtcaataaaagatgatgtatctagttaagaatttagaccaaatacatctacttttgtttatttaaatgtctattataaatatgatcgga 30130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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