View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11923_high_6 (Length: 539)
Name: NF11923_high_6
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 16086248 - 16085822
Alignment:
| Q |
15 |
atgaaagccaacaattcattcttcaaagctggtatccatccctacaaattacagcataaaataagcaaaaagagagaaagaatgtaacaattatatatgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16086248 |
atgaaagccaacaattcattcttcaaagctggtatccatccctacaaattacagcataaaataagcaaaaagagagaaagaatgtaacaattatatatgg |
16086149 |
T |
|
| Q |
115 |
tttcacctactagattatcaacttatgagatgcaatttctggatataatttgnnnnnnnnnnnnncaataaggtaacttactttaattgaatggagagct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16086148 |
tttcacctactagattatcaacttatgagatgcaatttctggatataatttgttttttcatttttcaataaggtaacttactttaattgaatggagagct |
16086049 |
T |
|
| Q |
215 |
cgtatataaggagaactcaaaacaattacaactatacttgaaacttaaaggtttaaaccaccgatgaataaccttacgaataggcaccagaaccatcctg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16086048 |
cgtatataaggagaactcaaaacaattacaactatacttgaaacttaaaggtttaaaccaccgatgaataaccttacgaataggcaccagaaccatcctg |
16085949 |
T |
|
| Q |
315 |
cagagctaacctca--ccctaaccaacatgtctcataataagcctactataagcaccaggtaaaaaacattttccgacgcaaaattaagcttttaacaga |
412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16085948 |
cagagctaacctcaccccctaaccaacatgtctcataataagcctactataagcaccaggtaaaaaacattttccgacgcaaaattaagcttttaacaga |
16085849 |
T |
|
| Q |
413 |
aatgtcattttgttcattaaccatata |
439 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16085848 |
aatgtcattttgttcattaaccatata |
16085822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 441 - 522
Target Start/End: Complemental strand, 16085693 - 16085612
Alignment:
| Q |
441 |
ggaaaaatctgcataatcttggcaccaaaattacaggccatggtccataaataagaagaaaatctgaaactgtagtcacatc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16085693 |
ggaaaaatctgcataatcttggcaccaaaattacaggccatggtccataaataagaaggaaatctgaaactgtagtcacatc |
16085612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 16080851 - 16080799
Alignment:
| Q |
15 |
atgaaagccaacaattcattcttcaaagctggtatccatccctacaaattaca |
67 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16080851 |
atgaaagtccacagttcattcttcaaagctggtatccactcctacaaattaca |
16080799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 46628273 - 46628351
Alignment:
| Q |
180 |
caataaggt-aacttactttaattgaatggagagctcgtatataaggagaactcaaaacaattacaactatacttgaaa |
257 |
Q |
| |
|
||||||||| |||| | |||||||||||| | |||| |||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
46628273 |
caataaggttaactgaatttaattgaatgcaaagcttgtatataaggagtattcaaaacagttacaactatacttgaaa |
46628351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University