View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_low_12 (Length: 417)

Name: NF11923_low_12
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_low_12
NF11923_low_12
[»] chr7 (4 HSPs)
chr7 (2-404)||(22383983-22384385)
chr7 (209-296)||(9699170-9699258)
chr7 (304-354)||(22383940-22383990)
chr7 (95-176)||(9699286-9699367)
[»] chr4 (6 HSPs)
chr4 (102-340)||(9003196-9003435)
chr4 (305-404)||(27655561-27655662)
chr4 (114-240)||(27655816-27655943)
chr4 (209-296)||(13565547-13565635)
chr4 (308-343)||(27655522-27655557)
chr4 (95-176)||(13565663-13565744)
[»] chr6 (6 HSPs)
chr6 (102-307)||(28523996-28524205)
chr6 (304-392)||(28237480-28237567)
chr6 (304-393)||(28523603-28523691)
chr6 (304-393)||(28187716-28187804)
chr6 (164-296)||(28237820-28237953)
chr6 (228-297)||(28245169-28245238)
[»] chr8 (2 HSPs)
chr8 (113-292)||(16054685-16054864)
chr8 (130-292)||(30837805-30837967)
[»] scaffold0038 (3 HSPs)
scaffold0038 (304-392)||(37642-37729)
scaffold0038 (164-296)||(37982-38115)
scaffold0038 (228-297)||(45331-45400)
[»] scaffold0010 (2 HSPs)
scaffold0010 (114-296)||(235623-235806)
scaffold0010 (304-384)||(170951-171030)
[»] chr3 (4 HSPs)
chr3 (107-204)||(25226616-25226713)
chr3 (304-392)||(27048050-27048137)
chr3 (221-296)||(25227439-25227516)
chr3 (124-184)||(25231830-25231890)
[»] chr2 (1 HSPs)
chr2 (220-296)||(32600863-32600939)
[»] chr5 (4 HSPs)
chr5 (134-323)||(27810039-27810229)
chr5 (219-296)||(6434903-6434979)
chr5 (103-170)||(16988327-16988394)
chr5 (118-174)||(15023592-15023648)
[»] chr1 (3 HSPs)
chr1 (217-307)||(40936557-40936647)
chr1 (105-296)||(21424695-21424887)
chr1 (217-296)||(28217030-28217109)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 404
Target Start/End: Complemental strand, 22384385 - 22383983
Alignment:
Q  2 catgtgaaaactttgtatatataatattgtaacccgaaaatgggatggtgccccaatnnnnnnntttaacaaaatatacacaaggnnnnnnnttgaacca 101  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||       |||||||||||||| | ||||       ||||| |     
T  22384385 catgtgaaaactttgtatatataatattgtaaccagaaaatgggacggtgccccaataaaaaaatttaacaaaatatataaaagggaaaaaattgaatcg 22384286  T
Q  102 gaagattattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctcc 201  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  22384285 gaagattattgtacattttcagttgacattgtgcaaaaagaacatgagtatgagtctttaaaatgtgaatcaagtggttctaatataggatccatgctcc 22384186  T
Q  202 aaagctaacactcaaacttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataaccaac 301  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  22384185 aaagttaacactcaaacttgagaatttagtaactaaagagagcatagtttacacaataacacatatggatcataattcaatctttatattcataaacaac 22384086  T
Q  302 tctaaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataatttaagagtagg-ttttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||    
T  22384085 tctaaaatattgaataaaatcaattaattacatccataattggggaactaaaa-ttagaataataatatgaagtatgaataatttaagagttggattttt 22383987  T
Q  401 agtg 404  Q
    ||||    
T  22383986 agtg 22383983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 9699258 - 9699170
Alignment:
Q  209 acactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    |||||||| |||| ||| |||||||||||||||||||||| |||||| |  |||||| ||  |||||||||||||  ||||||| ||||    
T  9699258 acactcaacacttaagagtttagtaactaaagagagcatattttacagaacaacacacatgaatcataattcaatggttatatttataa 9699170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 22383940 - 22383990
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaa 354  Q
    ||||||| |||||||||||||||| ||||||| | |||||||| |||||||    
T  22383940 taaaataatgaataaaatcaattagttacatcgacaattggggcactaaaa 22383990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 9699367 - 9699286
Alignment:
Q  95 tgaaccagaagattattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagt 176  Q
    |||||| |||||||  |||| ||||||| |||| ||||||||||||||| | | || ||  ||||||||||||||| |||||    
T  9699367 tgaaccggaagatttatgtatattttcatttgatattgtgcaaaaagaacaagggtgtggatctttgaaatgtgaaccaagt 9699286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 102 - 340
Target Start/End: Original strand, 9003196 - 9003435
Alignment:
Q  102 gaagattattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctcc 201  Q
    |||||||||| |||||||| | |||| ||||| |||||| || |||||||| | ||||||||||||||||||||||||||||||  || ||| |||||||    
T  9003196 gaagattattatacatttttatttgatattgtccaaaaataacatgagtataaatctttgaaatgtgaatcaagtggttctaatttagaatctatgctcc 9003295  T
Q  202 aaagctaacactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataaccaa 300  Q
    ||||  ||||||| | |||||| ||||||||||||||||||| |||  |||| ||| | |||||  || |||||||| ||||||||||||||||||   |    
T  9003296 aaagtcaacactcgacacttgaaaatttagtaactaaagagaacatgttttatacaattacacacctaaatcataatccaatctttatattcataaatca 9003395  T
Q  301 ctctaaaatattgaataaaatcaattaattacatccataa 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9003396 ctctaaaatattgaataaaatcaattaattacatccataa 9003435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 404
Target Start/End: Complemental strand, 27655662 - 27655561
Alignment:
Q  305 aaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatg-aataatttaagagt-aggtttttag 402  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||| |||||| || ||||||||||| || |||||||    
T  27655662 aaaatattgaataaaatcaattaattacatccataattggggcactaaaattagaaataatgatatggagtatgaaaaaatttaagagtcagatttttag 27655563  T
Q  403 tg 404  Q
    ||    
T  27655562 tg 27655561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 27655943 - 27655816
Alignment:
Q  114 acattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaagctaacact 213  Q
    |||| |||| ||||||||| ||||||| || |||||||||  ||||||||||||||| ||||||| ||||    ||| ||| ||||||||||   |||||    
T  27655943 acatcttcatttgacattgagcaaaaaaaacatgagtatggatctttgaaatgtgaaccaagtggctctacactaggttccgtgctccaaagtctacact 27655844  T
Q  214 c-aaacttgagaatttagtaactaaaga 240  Q
    | | ||||||||||||||||||||||||    
T  27655843 cgacacttgagaatttagtaactaaaga 27655816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 13565635 - 13565547
Alignment:
Q  209 acactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    |||||||| |||| ||| |||||||||||||||||||||| |||||| |  |||||| ||  |||||||||||||  ||||||| ||||    
T  13565635 acactcaacacttaagagtttagtaactaaagagagcatattttacagaacaacacacatgaatcataattcaatggttatatttataa 13565547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 343
Target Start/End: Original strand, 27655522 - 27655557
Alignment:
Q  308 atattgaataaaatcaattaattacatccataattg 343  Q
    |||||||||||||||||||||||||||||| |||||    
T  27655522 atattgaataaaatcaattaattacatccacaattg 27655557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 13565744 - 13565663
Alignment:
Q  95 tgaaccagaagattattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagt 176  Q
    |||||| |||||||  |||| ||||||| |||| ||||||||||||||| | | || ||  ||||||||||||||| |||||    
T  13565744 tgaaccggaagatttatgtatattttcatttgatattgtgcaaaaagaacaagggtgtggatctttgaaatgtgaaccaagt 13565663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 102 - 307
Target Start/End: Complemental strand, 28524205 - 28523996
Alignment:
Q  102 gaagattattgtacattttcagttgacattgtgcaaaaag----aatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatg 197  Q
    ||||||||||| ||||||||| |||||||| ||||||||     || ||||||  ||  |||||||||||||||||||||| |||||   ||||||||||    
T  28524205 gaagattattgcacattttcatttgacattatgcaaaaactaaaaacatgagttcgac-ctttgaaatgtgaatcaagtggctctaaactaggatccatg 28524107  T
Q  198 ctccaaagctaacactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    ||||||||   ||| || | ||||||||||||||||| ||||||||||||  |||||||| || |||| ||||||||||||||||| |||||||||||||    
T  28524106 ctccaaagtctacattcgacacttgagaatttagtaattaaagagagcatgttttacacaatagcacacatagatcataattcaatgtttatattcataa 28524007  T
Q  297 ccaactctaaa 307  Q
    || ||| ||||    
T  28524006 cccactataaa 28523996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 28237480 - 28237567
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataatttaagagt 392  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||  ||||| ||||||||||||||    
T  28237480 taaaatattgaataaaatcaattaattacatccacaattggagaactaaaa-ttagaataatgatatagagtataaataatttaagagt 28237567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 28523603 - 28523691
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataatttaagagta 393  Q
    ||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||  ||||| ||  |||||||||||    
T  28523603 taaaatattgaataaaatcaattaatttcatccacaattgggaaactaaaa-ttagaataatgatatagagtattaaagatttaagagta 28523691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 28187716 - 28187804
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataatttaagagta 393  Q
    ||||||||  |||||||| |||||||||||| || |||| ||||||||||| ||||||||| |||||  ||| |||||||||||||||||    
T  28187716 taaaatatcaaataaaattaattaattacattcacaattagggaactaaaa-ttagaataacgatatagagtttgaataatttaagagta 28187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 28237953 - 28237820
Alignment:
Q  164 atgtgaatcaagtggttctaatacaggatccatgctccaaagctaacactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaaca 262  Q
    ||||||| ||||||| |||||   ||||||||||||||||||   ||| || | |||| | |||||||||||||||||||||||  |||||||| || |     
T  28237953 atgtgaaccaagtggctctaaggtaggatccatgctccaaagtctacattcgacacttaataatttagtaactaaagagagcatgttttacacaatagcg 28237854  T
Q  263 catatagatcataattcaatctttatattcataa 296  Q
    || || ||| |||||| ||| |||||||||||||    
T  28237853 cacatggattataatttaatgtttatattcataa 28237820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 28245238 - 28245169
Alignment:
Q  228 tagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataac 297  Q
    |||||||||||||||  ||  |||||||| || |||| || |||||||||||||| ||||||||||||||    
T  28245238 tagtaactaaagagaatatgttttacacaatagcacacatggatcataattcaatgtttatattcataac 28245169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 113 - 292
Target Start/End: Complemental strand, 16054864 - 16054685
Alignment:
Q  113 tacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaagctaacac 212  Q
    |||||||||| |||| ||||||||||||||| | |||||||  ||||||||||||||| ||||||||| ||| ||  ||||||||| | ||||   ||||    
T  16054864 tacattttcatttgagattgtgcaaaaagaacacgagtatggatctttgaaatgtgaaccaagtggttataa-actagatccatgccctaaagtctacac 16054766  T
Q  213 tcaaa-cttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattc 292  Q
    || |  ||| ||||||||||||||||||||| |||| |||||||| || ||||||| |||||||||||||| |||||||||    
T  16054765 tcgacgcttaagaatttagtaactaaagagaacatattttacacaatagcacatatggatcataattcaatatttatattc 16054685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 30837805 - 30837967
Alignment:
Q  130 ttgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaagctaacactcaa-acttgagaattt 228  Q
    |||||| ||||||  | |||||||| ||||||||||||||| ||||||||| ||| ||  ||||||||||||||||   |||||  | ||||||||||||    
T  30837805 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaa-actagatccatgctccaaagtctacacttgacacttgagaattt 30837903  T
Q  229 agtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattc 292  Q
    ||||||||| |||| |||  ||| |||| || ||||||| |||||||||||||| |||||||||    
T  30837904 agtaactaaggagaacatgttttccacaatagcacatatggatcataattcaatgtttatattc 30837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 37642 - 37729
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataatttaagagt 392  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||  ||||| ||||||||||||||    
T  37642 taaaatattgaataaaatcaattaattacatccacaattggagaactaaaa-ttagaataatgatatagagtataaataatttaagagt 37729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 38115 - 37982
Alignment:
Q  164 atgtgaatcaagtggttctaatacaggatccatgctccaaagctaacactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaaca 262  Q
    ||||||| ||||||| |||||   ||||||||||||||||||   ||| || | |||| | |||||||||||||||||||||||  |||||||| || |     
T  38115 atgtgaaccaagtggctctaaggtaggatccatgctccaaagtctacattcgacacttaataatttagtaactaaagagagcatgttttacacaatagcg 38016  T
Q  263 catatagatcataattcaatctttatattcataa 296  Q
    || || ||| |||||| ||| |||||||||||||    
T  38015 cacatggattataatttaatgtttatattcataa 37982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 45400 - 45331
Alignment:
Q  228 tagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataac 297  Q
    |||||||||||||||  ||  |||||||| || |||| || |||||||||||||| ||||||||||||||    
T  45400 tagtaactaaagagaatatgttttacacaatagcacacatggatcataattcaatgtttatattcataac 45331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 296
Target Start/End: Complemental strand, 235806 - 235623
Alignment:
Q  114 acattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaagctaacact 213  Q
    ||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||  | |||   ||||||||||||||| ||   || ||    
T  235806 acattttcatttgacattgtgcaaaaagaacatgagtatgaatctttgaaatgtgaatcaagtgactttaaactaggatccatgctccatagtctacgct 235707  T
Q  214 c-aaacttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    | | ||||||||||||||||| |||||||| |||  |||| |||  |||||| ||  ||||||||| | | |||||||| ||||    
T  235706 cgacacttgagaatttagtaattaaagagaacatgttttatacaacaacacacatgaatcataattaagtgtttatattgataa 235623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 170951 - 171030
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataat 384  Q
    ||||||| ||| ||||||||| ||||||||||||||||| ||| | ||||| ||| |||||||||||| |||| |||||||    
T  170951 taaaatagtgagtaaaatcaagtaattacatccataatttgggcaataaaa-ttaaaataatgatatggagtaagaataat 171030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 25226616 - 25226713
Alignment:
Q  107 ttattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaa 204  Q
    |||||| ||||||||| |||||||||||||||||||| | |||||||| ||||||||||||||||||||||  |||||   |||||||||||| ||||    
T  25226616 ttattgcacattttcatttgacattgtgcaaaaagaacacgagtatgaatctttgaaatgtgaatcaagtgagtctaaatgaggatccatgcttcaaa 25226713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 27048137 - 27048050
Alignment:
Q  304 taaaatattgaataaaatcaattaattacatccataattggggaactaaaatttagaataatgatatgaagtatgaataatttaagagt 392  Q
    ||||||||||||| ||||||||||||||||| || |||| | | ||||||| |||||||||||||||  |||||||||| |||||||||    
T  27048137 taaaatattgaatgaaatcaattaattacattcacaattagagcactaaaa-ttagaataatgatatagagtatgaatagtttaagagt 27048050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 25227439 - 25227516
Alignment:
Q  221 gagaatttagtaactaaagagagcatagtttacacactaa--cacatatagatcataattcaatctttatattcataa 296  Q
    ||||||||| |||||||||||| |||  |||||||| ||   ||||||| |||||||||| ||| |||||||||||||    
T  25227439 gagaatttattaactaaagagaacatgttttacacaatatatcacatatggatcataatttaatgtttatattcataa 25227516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 25231830 - 25231890
Alignment:
Q  124 ttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaa 184  Q
    |||| |||||| |||||||| |||||| ||  |||||||||||| ||||||||||| ||||    
T  25231830 ttgatattgtgtaaaaagaacatgagtgtggatctttgaaatgtaaatcaagtggtgctaa 25231890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 32600863 - 32600939
Alignment:
Q  220 tgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    |||||||||| |||||||||||| |||  |||||||| ||||||| || |||||||||||||| |||||||||||||    
T  32600863 tgagaatttattaactaaagagaacatgttttacacaataacacacatggatcataattcaatgtttatattcataa 32600939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 323
Target Start/End: Original strand, 27810039 - 27810229
Alignment:
Q  134 gcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaagctaacactcaa-acttgagaatttagta 232  Q
    ||||||| ||||||||||||| ||||||||||||||| ||| ||  |||||   |  || ||||||||||||   |||||| | ||||||||||||||||    
T  27810039 gcaaaaataatatgagtatgaatctttgaaatgtgaaccaaatgaatctaaattactatacatgctccaaagtctacactcgacacttgagaatttagta 27810138  T
Q  233 actaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataaccaactctaaaatattgaataaaatca 323  Q
       ||| ||| |||  |||||||| ||||||| |||||| |||||| ||| ||||||||||| | | ||  ||||||||| || |||||||    
T  27810139 gtcaaaaagaacatgttttacacaataacacaaatagattataatttaatgtttatattcatgaaccaccgtaaaatattaaacaaaatca 27810229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 6434979 - 6434903
Alignment:
Q  219 ttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    ||||||||||| ||||||||||||||||  |||||||| || |||| || |||||||||| ||| |||||||||||||    
T  6434979 ttgagaatttaataactaaagagagcatgatttacacaatagcacacatggatcataatt-aatgtttatattcataa 6434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 16988327 - 16988394
Alignment:
Q  103 aagattattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaa 170  Q
    |||||||||| ||||||||| ||||  |||||||||||||| | |||||||  |||||||||||||||    
T  16988327 aagattattgcacattttcatttgatgttgtgcaaaaagaacacgagtatggatctttgaaatgtgaa 16988394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 15023648 - 15023592
Alignment:
Q  118 tttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaa 174  Q
    ||||| |||||||||| ||||||||| |  ||||||| | |||||||||||||||||    
T  15023648 tttcatttgacattgtacaaaaagaacacaagtatgaatttttgaaatgtgaatcaa 15023592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 40936557 - 40936647
Alignment:
Q  217 acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataaccaactctaaa 307  Q
    ||||||||||||  |||||||||||||||   |||||||| || |||| || ||||||||||||||  |||||||||||| ||||| ||||    
T  40936557 acttgagaattttataactaaagagagcaagttttacacaatagcacacatggatcataattcaatggttatattcataaacaactataaa 40936647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 296
Target Start/End: Original strand, 21424695 - 21424887
Alignment:
Q  105 gattattgtacattttcagttgacattgtgcaaaaagaatatgagtatgagtctttgaaatgtgaatcaagtggttctaatacaggatccatgctccaaa 204  Q
    |||||||  ||||||| | |||||||||||||||| |||   |||||||  | ||||||||||||| ||| |   |||||   |||||| ||||||||||    
T  21424695 gattattacacatttttatttgacattgtgcaaaaggaacgcgagtatgtatatttgaaatgtgaaccaaatcactctaaactaggatctatgctccaaa 21424794  T
Q  205 gctaacactcaa-acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    |   ||| || | |||||  ||| ||||||| |||||||||||  | |||||| || |||| || |||||||||||||| |||||||||||||    
T  21424795 gtctacattcgacacttggaaatctagtaaccaaagagagcatgttctacacaatagcacacatggatcataattcaatgtttatattcataa 21424887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 28217030 - 28217109
Alignment:
Q  217 acttgagaatttagtaactaaagagagcatagtttacacactaacacatatagatcataattcaatctttatattcataa 296  Q
    |||||||||||||||||  |||||||||||  |||||||| || |||| || || | | ||||||| |||||||||||||    
T  28217030 acttgagaatttagtaatcaaagagagcatgttttacacaatagcacacatggaacgttattcaatgtttatattcataa 28217109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University