View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_low_14 (Length: 395)

Name: NF11923_low_14
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_low_14
NF11923_low_14
[»] chr5 (1 HSPs)
chr5 (11-373)||(42268124-42268485)
[»] chr1 (5 HSPs)
chr1 (144-322)||(2070489-2070667)
chr1 (144-322)||(2074835-2075013)
chr1 (320-376)||(2070347-2070403)
chr1 (320-376)||(2074693-2074749)
chr1 (19-61)||(2077050-2077092)
[»] chr2 (1 HSPs)
chr2 (49-273)||(9911135-9911354)
[»] chr8 (2 HSPs)
chr8 (174-322)||(23636144-23636292)
chr8 (320-352)||(23636378-23636410)
[»] chr7 (4 HSPs)
chr7 (65-180)||(24718509-24718623)
chr7 (321-376)||(24718621-24718676)
chr7 (11-57)||(24718470-24718517)
chr7 (22-61)||(43032103-43032142)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 42268485 - 42268124
Alignment:
Q  11 cacagaacaacgaaatggacaagtctatatgagtcggacccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatc 110  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268485 cacaaaacaacgaaatggacaagtctatatgagtcggatccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatc 42268386  T
Q  111 tctaagctcctaataccaccacaagtaccacccaaagagaataaatttcctcaaaagtaaacttcaactgcatcaacagacaacaaaataaactccctat 210  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42268385 tctaagctgctaataccaccacaagtacctcc-aaagagaataaatttcctcaaaagtaaacttcaactgcatcaaaagacaacaaaataaactccctat 42268287  T
Q  211 accaccccatcacaataacctcccaaaaaatggaaaacacaatatgactaaaataccatccaagctcaacaccttcaaagtacgtacaaacagagcacga 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  42268286 accaccccatcataataacctcccaaaaaatggaaaacacaatatgactaaaatatcatccaagctcaacaccttcaaagtacgtacaaatagagcacga 42268187  T
Q  311 caccttgatcctggaatccgatctcgataacagcaacccaagagcaataactgtggaggatta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  42268186 caccttgatcctggaatccgatctcgataacagcaacccaagagcaacaattgtggagcatta 42268124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 144 - 322
Target Start/End: Complemental strand, 2070667 - 2070489
Alignment:
Q  144 aaagagaataaatttcctcaaaagtaaacttc-aactgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatg 242  Q
    |||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2070667 aaagagaataaattccctcaaaaataaactaccaactgcatccaaagacaacaaaataaactcccaataccaccccatcacaataacctcccaaaaaatg 2070568  T
Q  243 gaaaacacaatatgactaaaataccatccaagctcaacaccttcaaagtacgtacaaacagagcacgacaccttgatcct 322  Q
    |||||||||||| |||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2070567 gaaaacacaataggactcaaatacc-tccaaactcaacaccttcaaaatacgtacaaacagagcacgacaccttgatcct 2070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 144 - 322
Target Start/End: Complemental strand, 2075013 - 2074835
Alignment:
Q  144 aaagagaataaatttcctcaaaagtaaacttc-aactgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatg 242  Q
    |||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2075013 aaagagaataaattccctcaaaaataaactaccaactgcatccaaagacaacaaaataaactcccaataccaccccatcacaataacctcccaaaaaatg 2074914  T
Q  243 gaaaacacaatatgactaaaataccatccaagctcaacaccttcaaagtacgtacaaacagagcacgacaccttgatcct 322  Q
    |||||||||||| |||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2074913 gaaaacacaataggactcaaatacc-tccaaactcaacaccttcaaaatacgtacaaacagagcacgacaccttgatcct 2074835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 2070403 - 2070347
Alignment:
Q  320 cctggaatccgatctcgataacagcaacccaagagcaataactgtggaggattactc 376  Q
    |||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||    
T  2070403 cctggaatccgatctcgataacagcaacccaaaagcaacaacggtggagggttactc 2070347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 2074749 - 2074693
Alignment:
Q  320 cctggaatccgatctcgataacagcaacccaagagcaataactgtggaggattactc 376  Q
    |||||||||||||||||||||| ||||||||| ||||| ||| ||||||| ||||||    
T  2074749 cctggaatccgatctcgataactgcaacccaaaagcaacaacggtggagggttactc 2074693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 2077092 - 2077050
Alignment:
Q  19 aacgaaatggacaagtctatatgagtcggacccaacacaatta 61  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  2077092 aacgaaatggacaagtctagatgagccggacccaacacaatta 2077050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 49 - 273
Target Start/End: Original strand, 9911135 - 9911354
Alignment:
Q  49 cccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagctcctaataccaccacaagtaccacccaaaga 148  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||| ||| ||||||||||||||||||| |||||||    
T  9911135 cccaacacaattacctcccaatacagtcacctctcgaaaattaaaaacacaacaaaataaactctaaggtcccaataccaccacaagtacca-ccaaaga 9911233  T
Q  149 gaataaatttcctcaaaagtaaacttca-ac-tgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatggaaa 246  Q
    ||||||||| |||||||| |||| |||| || || ||||| |||||||||||||||||||| |||    ||||||| ||||||||||||||||||||| |    
T  9911234 gaataaattccctcaaaa-taaa-ttcacacatggatcaaaagacaacaaaataaactcccaata----cccatcataataacctcccaaaaaatggaga 9911327  T
Q  247 acacaatatgactaaaataccatccaa 273  Q
    ||| |||| |||  |||||||||||||    
T  9911328 acataataggacccaaataccatccaa 9911354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 23636144 - 23636292
Alignment:
Q  174 tcaactgcatcaacagacaacaaaataaactccctataccaccccatcacaataacctcccaaaaaatggaaaacacaatatgactaaaataccatccaa 273  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||| |||  |||||||||||||    
T  23636144 tcaactgcatcaaaagacagcaaaataaactcccaataccaccccatcgcaataacctcccaaaaaatggaaaatgcaataggacccaaataccatccaa 23636243  T
Q  274 gctcaacaccttcaaagtacgtacaaacagagcacgacaccttgatcct 322  Q
     ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  23636244 actcaacaccttcaaaatacgtacaaacagatcacgacaccttgatcct 23636292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 23636378 - 23636410
Alignment:
Q  320 cctggaatccgatctcgataacagcaacccaag 352  Q
    |||||||| ||||||||||||||||||||||||    
T  23636378 cctggaatacgatctcgataacagcaacccaag 23636410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 24718509 - 24718623
Alignment:
Q  65 cccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagctcctaataccaccacaagtaccacccaaagagaataaatttcctcaa 164  Q
    ||||| |||||||||||||||||||||||||||||||   |||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  24718509 cccaacacagtcacctcccgaaaattgaaaacacaactgaataaactctaagctcccaataccaccacaagtacca-ccaacgagaataaatttcctcaa 24718607  T
Q  165 aagtaaacttcaactg 180  Q
    |||||||| |||||||    
T  24718608 aagtaaacatcaactg 24718623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 24718621 - 24718676
Alignment:
Q  321 ctggaatccgatctcgataacagcaacccaagagcaataactgtggaggattactc 376  Q
    ||||||||||||| |||||||| |||||||||||||| ||  ||||||||||||||    
T  24718621 ctggaatccgatcacgataacaacaacccaagagcaacaagcgtggaggattactc 24718676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 24718470 - 24718517
Alignment:
Q  11 cacagaacaacgaaatggacaagtctata-tgagtcggacccaacaca 57  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  24718470 cacaaaacaacgaaatagacaagtctatattgagtcggacccaacaca 24718517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 43032142 - 43032103
Alignment:
Q  22 gaaatggacaagtctatatgagtcggacccaacacaatta 61  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  43032142 gaaatggacaagtctagatgagccggacccaacacaatta 43032103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University