View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_15 (Length: 378)
Name: NF11923_low_15
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 7356894 - 7357237
Alignment:
| Q |
19 |
cataataagcaattccataatcaccttcaccatgaacatttttaggacataatctacaagtatcatcttctagctctctcaaagcataccatctacctta |
118 |
Q |
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| T |
7356894 |
cataataagcaattccataatcaccttcaccatgaatatttttaggacataatctacaagtatcatcttctagctctctcaaagtataccatctacctta |
7356993 |
T |
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| Q |
119 |
ctaaagatgtgatacttcaagtccaaccccaccaacactaccactttcaaaagccgatgtcatttcacaaccacttcccattattcccttactctcacca |
218 |
Q |
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| T |
7356994 |
ctaaagatgtgacacttcaagtccaaccccaccaacactaccactttcaaaagccgatgtcatttcacaaccacttcccattattcccttactctcacca |
7357093 |
T |
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| Q |
219 |
ctagaaaccttatcgaatttaacaaccaccctatgttcttgtcttccaatgtccgcgtggatctttggtatactagagttggtcgccggagcatgtgtgg |
318 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
7357094 |
ctagaaaccttatcgaatttaacagccaccctatgttcttgtcttccaatgtccgcgtggatctttggtatactagagttggtcggccgagcatgtgtgg |
7357193 |
T |
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| Q |
319 |
acttgaaacaaacacaacctcttggatttctttaacaaatgtag |
362 |
Q |
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| T |
7357194 |
acttgaaacaaacacaacctcttggatttctttaacaaatgtag |
7357237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 352
Target Start/End: Original strand, 29791034 - 29791356
Alignment:
| Q |
28 |
caattccataatcaccttcaccatgaacatttttaggacataatctacaagtatcatcttctagctctctcaaagcataccatctaccttactaaagatg |
127 |
Q |
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| T |
29791034 |
caattccataaccaccttcaccaagaacattttcaggacacaatccaccagtagcatcttcaagctctcgcaaagtataccatctaccccatccaagatg |
29791133 |
T |
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| Q |
128 |
tgatacttcaagtccaaccccaccaacactaccactttcaaaagccgatgtcatttcacaaccacttcccattattcccttactctcaccactagaaacc |
227 |
Q |
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||| |||||| |||||| ||||||||||||||||||| |||||| ||| || ||||||| |||||||||| | |||| ||||||||||||| |||||| |
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| T |
29791134 |
tgacacttcaggtccaatcccaccaacactaccacttccaaaagacgacgtggtttcacacccacttcccactgttcctctactctcaccacttgaaacc |
29791233 |
T |
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| Q |
228 |
ttatcgaatttaacaaccaccctatgttcttgtcttccaatgtccgcgtggatctttggtatactagagttggtcgccggagcatgtgtggacttgaaac |
327 |
Q |
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||||| ||||||||||||| | |||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||||||||||||||| || ||| |
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| T |
29791234 |
ttatcagatttaacaaccacgcgatgttcttgtcttccaatgtccacgtggatctctgg--taccggagtaggtcgccggagcatgtgtggacctggaac |
29791331 |
T |
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| Q |
328 |
aaacacaacctcttggatttcttta |
352 |
Q |
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| ||| | |||||| ||||||||| |
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| T |
29791332 |
atgcacgatctcttgtatttcttta |
29791356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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