View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_low_16 (Length: 375)

Name: NF11923_low_16
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_low_16
NF11923_low_16
[»] chr6 (4 HSPs)
chr6 (1-236)||(8274710-8274944)
chr6 (1-238)||(794842-795078)
chr6 (1-236)||(8269995-8270228)
chr6 (1-236)||(799599-799833)
[»] chr7 (7 HSPs)
chr7 (1-237)||(6693743-6693978)
chr7 (1-236)||(6689003-6689227)
chr7 (58-234)||(33756592-33756767)
chr7 (235-330)||(5954613-5954708)
chr7 (16-192)||(27222103-27222270)
chr7 (95-210)||(31760712-31760829)
chr7 (35-83)||(9432073-9432121)
[»] chr5 (4 HSPs)
chr5 (1-236)||(19940939-19941172)
chr5 (1-236)||(19945693-19945926)
chr5 (53-236)||(42839290-42839464)
chr5 (73-237)||(7739816-7739972)
[»] chr8 (2 HSPs)
chr8 (1-237)||(26199710-26199934)
chr8 (1-76)||(6065866-6065941)
[»] chr4 (3 HSPs)
chr4 (62-234)||(42176900-42177072)
chr4 (37-236)||(11891394-11891591)
chr4 (12-234)||(11906374-11906592)
[»] chr1 (2 HSPs)
chr1 (1-236)||(31178257-31178484)
chr1 (11-197)||(11400392-11400576)
[»] chr2 (2 HSPs)
chr2 (66-211)||(37568898-37569044)
chr2 (133-211)||(31582832-31582910)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8274710 - 8274944
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  8274710 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgaaagtttgtgagtgtttgtaaacacatatatttccctttt-ta 8274808  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8274809 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaa 8274908  T
Q  201 tctgactatggggaaattgtgcctagtttcctaaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  8274909 tctgactatggggaaattgtgcctagtttcctaaca 8274944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 795078 - 794842
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  795078 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttcccttttt-a 794980  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  794979 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccacatttatttcacttccacttaa 794880  T
Q  201 tctgactatggggaaattgtgcctagtttcctaacatg 238  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  794879 tctgattatggggaaattgtgcctagtttcctaacatg 794842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8269995 - 8270228
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  8269995 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttt--a 8270092  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  8270093 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattttgtgtcttattattctgcatttatttcacttccacttaa 8270192  T
Q  201 tctgactatggggaaattgtgcctagtttcctaaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  8270193 tctgactatggggaaattgtgcctagtttcctaaca 8270228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 799833 - 799599
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  799833 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagttagagtttgtgagtgtttgtaaacacatatatttcccttttt-a 799735  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  799734 ttaaagagatatgcagcagtccggagagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaa 799635  T
Q  201 tctgactatggggaaattgtgcctagtttcctaaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  799634 tctgactatggggaaattgtgcctagtttcctaaca 799599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6693743 - 6693978
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6693743 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttt-ta 6693841  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6693842 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaa 6693941  T
Q  201 tctgactatggggaaattgtgcctagtttcctaacat 237  Q
    |||||||||||  | ||||||||||||||||||||||    
T  6693942 tctgactatggaaatattgtgcctagtttcctaacat 6693978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6689003 - 6689227
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||||||||| ||    
T  6689003 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgt----------aaaaacatatatttccctttt-ta 6689091  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  6689092 ttaaagagatttgcagcagttcggagagtaggcattattggccgaacttcgttaacaattttgtgtcttattattccgcatttatttctcttccacttaa 6689191  T
Q  201 tctgactatggggaaattgtgcctagtttcctaaca 236  Q
    |||||||||||| | ||||||| |||||||||||||    
T  6689192 tctgactatgggaatattgtgcatagtttcctaaca 6689227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 33756592 - 33756767
Alignment:
Q  58 agagtttgtgagtgtttgtaaacacatatatttcccttttttattaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaaca 157  Q
    |||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |    
T  33756592 agagattgtgagtgattgtaaacacgtatatttccctttt-tattaaagagatctgcagcagtccagagagtaggtattattggccgaacttcgttaaga 33756690  T
Q  158 attctgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcctagtttcctaa 234  Q
    ||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  33756691 attttgtgtgttattatttcgcatttatttcacttccatttaatctgactatggggaaattttgcatagtttcctaa 33756767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 5954708 - 5954613
Alignment:
Q  235 catggtcaatcctcaatttttgttcccatcattttttatttcgcaattttggttcttggtaaacctgttgagcctttctctgttgttaaagctttc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5954708 catggtcaatcctcaatttttgttcccatcattttttatttcgcaattttggttcttggtaaacctgttgagcctttctctgttgttaaagctttc 5954613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 27222103 - 27222270
Alignment:
Q  16 ttttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttcccttttttattaaagagatctgca 115  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||| |||||||||||||||||| |||| ||| ||||| | | ||    
T  27222103 ttttagagaaaattcttgggtgtaattgagttgtgggtagtaagagattgcgagtgtttataaacacatatatttccc-ttttaattgaagag-ttttca 27222200  T
Q  116 gcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtct--tattattccgcatttatttcactt 192  Q
    ||         ||||||||| ||||| |||||||||||| ||||| ||||| |  ||||||||||||||||||||||||    
T  27222201 gc---------agtaggcataattggtcgaacttcgttatcaattttgtgtgtgctattattccgcatttatttcactt 27222270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 31760712 - 31760829
Alignment:
Q  95 tttttattaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttat--tattccgcatttatttcactt 192  Q
    |||||||||||||||| ||||| | |  | |||||||  ||||||||| ||||||||||||||| | ||||||||||  |||||||||||||||| ||||    
T  31760712 tttttattaaagagatttgcagtattttgaagagtagatattattggctgaacttcgttaacaaatttgtgtcttatgttattccgcatttattttactt 31760811  T
Q  193 ccacttaatctgactatg 210  Q
    ||||||||| | ||||||    
T  31760812 ccacttaatttaactatg 31760829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 9432121 - 9432073
Alignment:
Q  35 gtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacaca 83  Q
    |||||||| |||| |||||| ||| || |||||||||||||||||||||    
T  9432121 gtgtaattaggttttgggtaatgaaagattgtgagtgtttgtaaacaca 9432073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19940939 - 19941172
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19940939 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttt-ta 19941037  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19941038 ttaaagagatctgcagcagtccggagagtaggcattattggccaaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaa 19941137  T
Q  201 tctgactatggggaaattgtgcctagtttcctaaca 236  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19941138 tctgactat-gggaaattgtgcctagtttcctaaca 19941172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19945693 - 19945926
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19945693 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttt-ta 19945791  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19945792 ttaaagagatctgcagcagtccggagagtaggcattattggccaaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaa 19945891  T
Q  201 tctgactatggggaaattgtgcctagtttcctaaca 236  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19945892 tctgactat-gggaaattgtgcctagtttcctaaca 19945926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 42839290 - 42839464
Alignment:
Q  53 tagtgagagtttgtgagtgtttgtaaacacatatatttcccttttttattaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgt 152  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||        |||||||| |||||||||||||||||||    
T  42839290 tagtgagagattgtgagtgtttgtaaacacgtatatttcccttttt-attaaagagatctgcag--------agagtaggtattattggccgaacttcgt 42839380  T
Q  153 taacaattctgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcctagtttcctaaca 236  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||||||||||||    
T  42839381 taacaactttgtgtgttattattccgcatttatttcacttccacttaatttgactatgggtaaattttgcgtagtttcctaaca 42839464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 7739816 - 7739972
Alignment:
Q  73 ttgtaaacacatatatttcccttttttattaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttatt 172  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |   |||||| | |||||||||||||||||||||||||||         |||     
T  7739816 ttgtaaacacatatatctcccttttttattaaagagatgtgcagcaatggagagagttgacattattggccgaacttcgttaacaat--------ctatc 7739907  T
Q  173 attccgcatttatttcacttccacttaatctgactatggggaaattgtgcctagtttcctaacat 237  Q
    ||||||||||||||| ||||||| ||||| |||||||||  ||||  ||| ||||||| ||||||    
T  7739908 attccgcatttatttaacttccatttaatttgactatggacaaatcttgcatagtttcataacat 7739972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26199710 - 26199934
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  26199710 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacac--atatttccc-ttttta 26199806  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaa 200  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26199807 ttaaagagatctgcagcagtccggagagta---------ggccgaacttcgttaacaattttgtgtcttattattccgcatttatttcacttccacttaa 26199897  T
Q  201 tctgactatggggaaattgtgcctagtttcctaacat 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  26199898 tctgactatggggaaattgtgcctagtttcctaacat 26199934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6065866 - 6065941
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgt 76  Q
    |||||| || |||||||||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||||||||    
T  6065866 aactcattgagagaattttagagaaaattcttcgatgtaattgggttgcgggtagcgagagattgtgagtgtttgt 6065941  T

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Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 42176900 - 42177072
Alignment:
Q  62 tttgtgagtgtttgtaaacacatatatttcccttttttattaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattc 161  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||     
T  42176900 tttgtgagtgtttgtaaacacatatatttctctttttaattaaagagatctgcagcagttcggagagtaggcattattggccgaacttcgttaataattt 42176999  T
Q  162 tgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcctagtttcctaa 234  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  42177000 tgtgtcttattatttcatatttatttcacttccacttaatctgactatgaggaaattgtgcgtagtttcctaa 42177072  T

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Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 11891591 - 11891394
Alignment:
Q  37 gtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttcccttttttattaaagagatctgcagcagtccggagagtaggcatt 136  Q
    ||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| || ||||  |||||||||||||||| |||||| ||||||||| |||    
T  11891591 gtaattgggttatgggtagtaagagattgtgagtgtttgtaaatacatatattcccatttt--attaaagagatctgcaacagtccagagagtaggtatt 11891494  T
Q  137 attggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaatctgactatggggaaattgtgcctagtttcctaaca 236  Q
    ||||| ||||||||| |||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  11891493 attggacgaacttcgctaacaattttttgtgttattattctgcatttatttcacttccacttaatctgactatgaggaaattttgcgtagtttcctaaca 11891394  T

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Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 11906592 - 11906374
Alignment:
Q  12 agaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttcccttttttattaaagagatc 111  Q
    ||||||||| ||||  || ||||||||||||  |||||| |  |||| |||||||||||||||||||| ||||||||||||| |||| |||| | ||||     
T  11906592 agaattttaaagaatttttttgggtgtaattttgttgtgagcggtgaaagtttgtgagtgtttgtaaatacatatatttcccctttt-attataaagata 11906494  T
Q  112 tgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaatctgactatgg 211  Q
    | |||||||| ||||| | |||||||||||||||||||| ||||||||| ||||| ||||||||||||||   |||||||||||||||||||||||||||    
T  11906493 tccagcagtctggagatttggcattattggccgaacttcattaacaattttgtgtgttattattccgcat---tttcacttccacttaatctgactatgg 11906397  T
Q  212 ggaaattgtgcctagtttcctaa 234  Q
    ||||||| ||| |||||||||||    
T  11906396 ggaaattttgcgtagtttcctaa 11906374  T

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Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31178484 - 31178257
Alignment:
Q  1 aactcagtgtgagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttccctttttta 100  Q
    ||||||||| | |||||||||||||||||||| ||||||||||| |||||       ||||||||||||||||| ||||||  ||||||||||||||| |    
T  31178484 aactcagtgagggaattttagagaaaattcttaggtgtaattggattgtg-------agagtttgtgagtgtttctaaaca--tatatttcccttttt-a 31178395  T
Q  101 ttaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtg---tcttattattccgcatttatttcacttccact 197  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||   | |||||||||||||||||||| |||||||||    
T  31178394 ttaaagagatctgcaacagtccggagagtaggcattattggccgaacttcgttaacaattttgtgtgttattattattccgcatttattttacttccact 31178295  T
Q  198 taatctgactatggggaaattgtgcctagtttcctaaca 236  Q
    | ||||||| ||||||||||| ||| |||||||||||||    
T  31178294 t-atctgacaatggggaaattttgcgtagtttcctaaca 31178257  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 11400576 - 11400392
Alignment:
Q  11 gagaattttagagaaaattcttgggtgtaattgggttgtgggtagtgagagtttgtgagtgtttgtaaacacatatatttcccttttttattaaagagat 110  Q
    |||||||||||||| | ||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||      
T  11400576 gagaattttagagacagttcttgggtgtaattggattgtggatagtgagagattttgagtgtttgtaaacacatata-ttcccctttttattaaagagga 11400478  T
Q  111 ctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccact 197  Q
    ||  || || | | | ||||| ||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  11400477 ctttagtagcctgcatagtagacataattgaccgaacttcgttaacaatt-tgtgtgttattattccgcatttatttcacttccact 11400392  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 37568898 - 37569044
Alignment:
Q  66 tgagtgtttgtaaacacatatatt-tcccttttttattaaagagatctgcagcagtccggagagtaggcattattggccgaacttcgttaacaattctgt 164  Q
    |||||||||||||||||||||||| |||| |||  |||||| |||| ||||  |||||  |||||||||||||||||||||| ||| ||||||||| |||    
T  37568898 tgagtgtttgtaaacacatatattctcccgttt--attaaaaagatttgcattagtccatagagtaggcattattggccgaatttcattaacaattttgt 37568995  T
Q  165 gtct--tattattccgcatttatttcacttccacttaatctgactatgg 211  Q
    || |  ||||||||||||||||||||||||||| ||||| |||||||||    
T  37568996 gtgtgctattattccgcatttatttcacttccatttaatttgactatgg 37569044  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 31582910 - 31582832
Alignment:
Q  133 cattattggccgaacttcgttaacaattctgtgtcttattattccgcatttatttcacttccacttaatctgactatgg 211  Q
    |||||||| ||||||||| ||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  31582910 cattattgaccgaacttcattaacaattttgtgtgttattattccatatttatttcacttccacttaatctgactatgg 31582832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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