View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_low_17 (Length: 370)

Name: NF11923_low_17
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_low_17
NF11923_low_17
[»] chr5 (16 HSPs)
chr5 (23-357)||(30060639-30060973)
chr5 (20-357)||(30749910-30750247)
chr5 (21-326)||(29853579-29853884)
chr5 (20-345)||(30400341-30400666)
chr5 (21-326)||(30436084-30436389)
chr5 (21-326)||(30712958-30713263)
chr5 (40-317)||(30483688-30483965)
chr5 (40-326)||(30338058-30338344)
chr5 (21-321)||(29872442-29872742)
chr5 (40-321)||(30241919-30242194)
chr5 (26-345)||(30206795-30207114)
chr5 (168-326)||(30676821-30676979)
chr5 (63-323)||(30475685-30475945)
chr5 (28-235)||(17983182-17983389)
chr5 (81-322)||(30521162-30521403)
chr5 (81-322)||(30561502-30561743)
[»] chr7 (1 HSPs)
chr7 (40-326)||(26707619-26707905)
[»] chr4 (3 HSPs)
chr4 (21-326)||(20296115-20296420)
chr4 (29-326)||(52352235-52352532)
chr4 (32-325)||(13616876-13617168)
[»] chr1 (2 HSPs)
chr1 (28-345)||(7581233-7581550)
chr1 (28-357)||(7099696-7100025)
[»] chr3 (1 HSPs)
chr3 (26-182)||(25293601-25293757)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 30060639 - 30060973
Alignment:
Q  23 tacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaaca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060639 tacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaaca 30060738  T
Q  123 ttgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaatttta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060739 ttgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaatttta 30060838  T
Q  223 agccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060839 agccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattg 30060938  T
Q  323 ccacgagatcagcacgctcttctttgtgatgtcca 357  Q
    |||||||||||||||||||||||||||||||||||    
T  30060939 ccacgagatcagcacgctcttctttgtgatgtcca 30060973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 30749910 - 30750247
Alignment:
Q  20 tattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30749910 tattacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaa 30750009  T
Q  120 acattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30750010 acattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactatctttaatt 30750109  T
Q  220 ttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttccta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30750110 ttaagccattccttttcatctttccttgagttcattaaacttcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccta 30750209  T
Q  320 ttgccacgagatcagcacgctcttctttgtgatgtcca 357  Q
    |||||||||||||||||||||||||||||| |||||||    
T  30750210 ttgccacgagatcagcacgctcttctttgtaatgtcca 30750247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 29853579 - 29853884
Alignment:
Q  21 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaa 120  Q
    ||||||| |||||||||| ||||||||||||||||||||   |||||||||||| || ||||||||| |||| |||||||||||||| ||||| ||||||    
T  29853579 attacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaatatagcgcaaaaggagaaa 29853678  T
Q  121 cattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 220  Q
    ||||||||||||| ||  | |||||||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||| |||||||||||||| |    
T  29853679 cattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatat 29853778  T
Q  221 taagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctat 320  Q
     ||||||||||||||| || ||||||||| |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  29853779 caagccattccttttcttcattccttgagctcatcaaacctcccaatgtttttgctgcaagaggcaatccattacatttctttacaatctcctttcctat 29853878  T
Q  321 tgccac 326  Q
    | ||||    
T  29853879 ttccac 29853884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 30400341 - 30400666
Alignment:
Q  20 tattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaa 119  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||||||||||| || | ||||||   ||| ||||||||||||||||||||||||||    
T  30400341 tattaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaatatagcacaaaaagagaa 30400440  T
Q  120 acattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaatt 219  Q
    |||||| |||||||  |  | |||||||||||||||||||||||||| | |||||||  ||||||| |||| |||| ||||||| ||| ||||||||||     
T  30400441 acattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaagctcagtgtctttaata 30400540  T
Q  220 ttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttccta 319  Q
    | |||||||||||||||  | ||||||||| |||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30400541 tcaagccattccttttctccattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccta 30400640  T
Q  320 ttgccacgagatcagcacgctcttct 345  Q
    |||| || || || ||||||||||||    
T  30400641 ttgctacaagttctgcacgctcttct 30400666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 30436084 - 30436389
Alignment:
Q  21 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaa 120  Q
    ||||||| |||||||||| ||| |||||||||||||||| | |||||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||    
T  30436084 attacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaa 30436183  T
Q  121 cattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 220  Q
    ||||| ||||||| ||  | |||||||||||||||||| |||||||| |||||||| |||||||| | || |||| ||||||| |||||||||||||| |    
T  30436184 cattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatat 30436283  T
Q  221 taagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctat 320  Q
     ||||||||||||||| || ||||||||| |||| ||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  30436284 caagccattccttttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaat 30436383  T
Q  321 tgccac 326  Q
    | ||||    
T  30436384 ttccac 30436389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 30713263 - 30712958
Alignment:
Q  21 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaa 120  Q
    ||||||| |||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||    
T  30713263 attacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaa 30713164  T
Q  121 cattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 220  Q
    ||||| ||||||| ||  | ||||||||||||||||| |||||||||||||||||| |||||||| | || |||| ||||||| |||||||||||||| |    
T  30713163 cattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatat 30713064  T
Q  221 taagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctat 320  Q
     ||||||||| ||||| || ||||||||| |||| ||||  ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  30713063 caagccattcattttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagtggcaatccattacatttctttgctatctcctttcctat 30712964  T
Q  321 tgccac 326  Q
    | ||||    
T  30712963 ttccac 30712958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 40 - 317
Target Start/End: Original strand, 30483688 - 30483965
Alignment:
Q  40 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 139  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||  |    
T  30483688 aatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30483787  T
Q  140 gtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 239  Q
     |||||||||||||||||||||||||||||| ||||| || ||||||| || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  30483788 ttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 30483887  T
Q  240 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcc 317  Q
     ||| |||||  ||||||||  ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  30483888 attcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcc 30483965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 40 - 326
Target Start/End: Complemental strand, 30338344 - 30338058
Alignment:
Q  40 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 139  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||  |    
T  30338344 aatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30338245  T
Q  140 gtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 239  Q
     |||||||||||||||||| ||||||||||| ||||| || ||||||| || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  30338244 ttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 30338145  T
Q  240 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccac 326  Q
     ||| |||||  ||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  30338144 attcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccac 30338058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 29872442 - 29872742
Alignment:
Q  21 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaa 120  Q
    ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||| || ||||||| |  ||| |||||||||||||| ||||||||||||    
T  29872442 attacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaatatagcgcaaaaagagaaa 29872541  T
Q  121 cattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 220  Q
    ||||| ||||||| ||  | |||||||||||||||||||||||||||| ||||||| |||||||| |  |||||| ||||||| |||||||| ||||| |    
T  29872542 cattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaagctcactgtccttaatat 29872641  T
Q  221 taagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctat 320  Q
     ||||||||||||||| || ||||||||| |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  29872642 caagccattccttttcttcattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttacaatctcctttcctat 29872741  T
Q  321 t 321  Q
    |    
T  29872742 t 29872742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 30242194 - 30241919
Alignment:
Q  40 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 139  Q
    |||||||||||||| || |||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||  |    
T  30242194 aatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagagttggtg 30242095  T
Q  140 gtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 239  Q
     |||||||||||||||||||||||||||||||||||      |||| | ||  ||  ||||||| || || |||||||||| ||||||||||| ||| ||    
T  30242094 ttaaataaaagtaactcaacctcaaagcaggcaaaa------tttcttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttc 30242001  T
Q  240 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctatt 321  Q
     ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  30242000 attccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattacatttctttacaatctcctttcctatt 30241919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 345
Target Start/End: Original strand, 30206795 - 30207114
Alignment:
Q  26 ccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattg 125  Q
    |||||||| |||| ||| ||||||||||||||||   ||||||||||||| | | || ||||| |||||||||||| ||||||||||||| ||||||  |    
T  30206795 ccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaacatagcacaaaaagcgaaacaccg 30206894  T
Q  126 ttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagc 225  Q
     |||| || ||  | ||||| |||||| ||||||||||||||||| |||||  |||| |||| || |||| ||||||||||||| |||||||||| ||||    
T  30206895 ctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaagttcactctctttaatttcaagc 30206994  T
Q  226 cattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgcca 325  Q
    ||||| ||||| || ||||||||  |||||| || |||||||| || ||||||||||||||||||||  ||||||||||||||||||||||||||| |||    
T  30206995 cattctttttcttcattccttgaactcattagacctcccaatgcttgtgctgcaagaggcaatccatcacatttctttactatctcctttcctatttcca 30207094  T
Q  326 cgagatcagcacgctcttct 345  Q
    | || || ||||||||||||    
T  30207095 caagctctgcacgctcttct 30207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 30676979 - 30676821
Alignment:
Q  168 aggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaat 267  Q
    ||||||||| |||||||  | || |||| ||||||| |||||||||||||| | |||||||||||| || || ||||||||| |||| ||||  ||||||    
T  30676979 aggcaaaatagaatttttttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaat 30676880  T
Q  268 gattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccac 326  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  30676879 gcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccac 30676821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 323
Target Start/End: Original strand, 30475685 - 30475945
Alignment:
Q  63 aatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctc 162  Q
    |||||| ||||||||||  |||||   ||||||||||||||| ||||||||||  |||||  | |||| ||  |  | ||||| |||||| || ||||||    
T  30475685 aatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggtcggtgttaaatgaaagtagcttaacctc 30475784  T
Q  163 aaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttc 262  Q
    || || |||||||||||||| |||| || |||   ||| || | |||||||||||||| ||||||||| ||||||||  ||||||||  ||||| || ||    
T  30475785 aaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcattttcatcactccttgagcgcattagacctc 30475884  T
Q  263 ccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgc 323  Q
    |||||| || ||||||||||||||||||    || |||||||||||| |||| ||||||||    
T  30475885 ccaatgcttgtgctgcaagaggcaatcctccacacttctttactatcgccttacctattgc 30475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 17983182 - 17983389
Alignment:
Q  28 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 127  Q
    |||||||| || |||  |||||||||||||||   ||| | |||||| || | ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  17983182 ctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaatatagcacaaaaagcgaaacattgtt 17983281  T
Q  128 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 227  Q
    ||| || ||  | ||||| |||||| |||||||| | ||| || ||||| ||||| ||||  | |||| |||| || || || |||||||||| || |||    
T  17983282 ttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagagctcgctctctttaatttcaaacca 17983381  T
Q  228 ttcctttt 235  Q
    ||||||||    
T  17983382 ttcctttt 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 322
Target Start/End: Complemental strand, 30521403 - 30521162
Alignment:
Q  81 gatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaa 180  Q
    |||||||  |||||||||||| || |||||||||| |||||||||||||| || ||    ||||| |||||| |||||||| |||||||||||||| |||    
T  30521403 gatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaa 30521304  T
Q  181 ttttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaa 280  Q
    || ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  |||||  | |||||||| || ||||||||    
T  30521303 ttctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaa 30521204  T
Q  281 gaggcaatccattgcatttctttactatctcctttcctattg 322  Q
    ||||||||||    || |||||||||||||| ||||||||||    
T  30521203 gaggcaatcccccacacttctttactatctcttttcctattg 30521162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 322
Target Start/End: Complemental strand, 30561743 - 30561502
Alignment:
Q  81 gatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaa 180  Q
    |||||||  |||||||||||| || |||||||||| |||||||||||||| || ||    ||||| |||||| |||||||| |||||||||||||| |||    
T  30561743 gatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaa 30561644  T
Q  181 ttttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaa 280  Q
    || ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  |||||  | |||||||| || ||||||||    
T  30561643 ttctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaa 30561544  T
Q  281 gaggcaatccattgcatttctttactatctcctttcctattg 322  Q
    ||||||||||    || |||||||||||||| ||||||||||    
T  30561543 gaggcaatcccccacacttctttactatctcttttcctattg 30561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 40 - 326
Target Start/End: Original strand, 26707619 - 26707905
Alignment:
Q  40 aatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccg 139  Q
    ||||||||||||||||||||   ||||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||  |    
T  26707619 aatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatagcacaaaaagagaaacattgctttagggttggtg 26707718  T
Q  140 gtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatc 239  Q
     |||||||||||||||||||||||||||||||||||| || ||||| | || |||||||||||| |||||||||||||| | ||||||||||||||| ||    
T  26707719 ttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttc 26707818  T
Q  240 tttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccac 326  Q
     ||| |||||  |||||||| |||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||    
T  26707819 attcattgagaacattaaacctcccaatgcttttgctgcaagaggtaatccattacatttttttactatctcctttcctatttccac 26707905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 20296420 - 20296115
Alignment:
Q  21 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaa 120  Q
    ||||||| |||||||||| |||||||||||||||||||||  |||||||||||| || | |||||||  ||| || ||||||||||||||||||||||||    
T  20296420 attacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaatatagcacaaaaagagaaa 20296321  T
Q  121 cattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 220  Q
    ||||| ||||| | ||  | ||||||||||||||||| |||||||||||||||||| || ||||| | || |||| ||||||| ||| |||||||||| |    
T  20296320 cattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaaaggtcattgtctttaatat 20296221  T
Q  221 taagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctat 320  Q
     | ||||||||||||| || ||| |||||  |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20296220 cacgccattccttttcttcattcattgagaccattaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctat 20296121  T
Q  321 tgccac 326  Q
    | ||||    
T  20296120 ttccac 20296115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 326
Target Start/End: Original strand, 52352235 - 52352532
Alignment:
Q  29 tagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttt 128  Q
    |||| ||||| |||||||| |||||||| ||   |||||| || || ||||||||||| | ||||||||||||||| ||||| |||||||||||||||||    
T  52352235 tagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttt 52352334  T
Q  129 tagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccat 228  Q
    || || || || |||||  || |||||||||||||| ||||||||||| ||||| ||||||||||||  |||||| |  || |||||||||| || ||||    
T  52352335 taaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccat 52352434  T
Q  229 tccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccac 326  Q
    ||||||||  | || ||||||  ||||| || ||| |||| || ||| ||||||||||||||    || |||||||||||| | || |||||||||||    
T  52352435 tccttttctccatttcttgagcgcattagacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcgctttgcctattgccac 52352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 325
Target Start/End: Original strand, 13616876 - 13617168
Alignment:
Q  32 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttag 131  Q
    ||||||| ||| ||||||||||||||||   ||||||||||||||||  ||||| || |||||| ||||||| | |||| |||| ||| |||||||| |     
T  13616876 atgaaataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaa 13616975  T
Q  132 ggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 231  Q
    || || || |||||  |||||||||| ||||||| |||| ||||| ||||| ||||    |||||||||||| || || ||| |||||| |  |||||||    
T  13616976 ggttggcgataaat-gaagtaactcagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattcc 13617074  T
Q  232 ttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgcca 325  Q
    |||||  |  |||| ||||  |||| |   ||||||| || | ||||||||||||||||    || || || ||||||||||||||||||||||    
T  13617075 ttttctccactcctcgagtgtattagagaccccaatgcttgtcctgcaagaggcaatcctccacactttttaactatctcctttcctattgcca 13617168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 345
Target Start/End: Complemental strand, 7581550 - 7581233
Alignment:
Q  28 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 127  Q
    ||||||||||| ||| ||||||||||||||||   ||||||||||||||| | ||||| || |||||| ||||||||||||||||||| |||||||||||    
T  7581550 ctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgtt 7581451  T
Q  128 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 227  Q
    ||| || ||  | ||||| |||||| ||||| |||| ||| |||||| | ||||| ||||  | |||||||||||| || || |||||||||| || |||    
T  7581450 ttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaacca 7581351  T
Q  228 ttccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccacg 327  Q
    ||||||||| ||  ||||||||| ||||| ||  ||||||| || ||||||||||||||||||    ||||| |||||||||||||| |||||||||||     
T  7581350 ttccttttcttcactccttgagtgcattagacaccccaatgcttgtgctgcaagaggcaatcccgcacatttttttactatctccttgcctattgccaca 7581251  T
Q  328 agatcagcacgctcttct 345  Q
    || || |||| |||||||    
T  7581250 agctctgcactctcttct 7581233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 357
Target Start/End: Original strand, 7099696 - 7100025
Alignment:
Q  28 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgtt 127  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||| | ||||| || ||||||| |||||||||||||||||| |||||||||||    
T  7099696 ctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgtt 7099795  T
Q  128 ttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 227  Q
    ||| || ||  | |||||  ||||| |||||||||||||| |||||||| ||||| || |  | |||| |||| |  ||||| ||||||||||  | |||    
T  7099796 ttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttctaacca 7099895  T
Q  228 ttccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccacg 327  Q
    | | ||||| ||  | ||||| | ||||| ||  || |||| || ||||||||||||||||||    || || |||||||||||||| ||||||  |||     
T  7099896 tgctttttcttcacttcttgaatgcattagacaccctaatgcttgtgctgcaagaggcaatcctccacacttttttactatctccttgcctattttcaca 7099995  T
Q  328 agatcagcacgctcttctttgtgatgtcca 357  Q
    || ||||||||||||||| ||| |||||||    
T  7099996 agctcagcacgctcttctctgtaatgtcca 7100025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 25293757 - 25293601
Alignment:
Q  26 ccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattg 125  Q
    ||||||||||||| ||||||||||||||||||||   | |||||||||||||   ||||| || |||||| ||||| |||||||||||||  |||||| |    
T  25293757 ccctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaacatagcacaaaaagcaaaacatcg 25293658  T
Q  126 ttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaatt 182  Q
     |||| ||  |  | |||||||||||| ||||||| ||| | ||| ||||| |||||    
T  25293657 ctttaaggtcggagttaaataaaagtagctcaaccacaaggaaggaaaaatagaatt 25293601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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