View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11923_low_2 (Length: 583)
Name: NF11923_low_2
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 47201947 - 47201579
Alignment:
| Q |
19 |
attctgattctgacatttacccaagtacatgataaacaaacaagtacagtgtgtgtgttacactaaattcaacagtaccatattcttattattagtatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47201947 |
attctgattctgacatttacccaagtacatgataaacaaacaagtacagtgtgtgtgttacactaaattcaatagtaccatattcttattattagtatta |
47201848 |
T |
|
| Q |
119 |
taagaagaaacaaagtagccaacttttttcacttgtcgttcatggcttcaacaatgatgggttttggtgtttcatccatttccaccataacatattctca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47201847 |
taagaagaaacaaagtagccaacttttttcacttgtcgttcatggcttcaacaatgatgggttttggtgtttcatccatttccaccataacatattctca |
47201748 |
T |
|
| Q |
219 |
aagaagatatcttcaacctcgtaaatttcaagttcatcaatcacgtagcttagatatattgtcatctgaatctgatccattaaacggaacttcttc---- |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47201747 |
aagaagatatcttcaacctcgtaaatttcaagttcatcaatcacgtagcttagatatattgtcatctgaatctgatccattaaacggaacttcttcttct |
47201648 |
T |
|
| Q |
315 |
--ttctgttgttgttgaaacaaaccaaaacaaggttcctcttttattgcgttctactaataatgttgtt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47201647 |
tcttctgttgttgttgaaacaaaccaaaacaaggttcctcttttattgcgttctactaataatgttgtt |
47201579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 412 - 573
Target Start/End: Complemental strand, 47201548 - 47201387
Alignment:
| Q |
412 |
caggttgggttggcaccactttgggatgatgggtatgggaatcgcactgttgaagattactttgctgcatccaaagagatttgcaagtttgatggtggcc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47201548 |
caggttgggttggcaccactttgggatgatgggtatgggaatcgcactgttgaagattactttgctgcatccaaagagatttgcaagtttgatggtggcc |
47201449 |
T |
|
| Q |
512 |
caccacgttggttttgcccaatcgaatgtgcttctcctttccaaggttctcccacccctatg |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47201448 |
caccacgttggttttgcccaatcgaatgtgcttctcctttccaaggttctcccacccttatg |
47201387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University