View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11923_low_24 (Length: 250)
Name: NF11923_low_24
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 7817007 - 7816878
Alignment:
| Q |
115 |
cctttgaagagtgattagtgatgttggaaactattccagcctcaatagtgagtgagttagccattgatgtctttctctctttgaggctcttcttgttcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7817007 |
cctttgaagagtgattagtgatgttggaaactattccagcctcaatagtgagtgagttagccattgatgtctttctttctttgaggctcttcttgttcat |
7816908 |
T |
|
| Q |
215 |
tgtctccttccacttttttatctctgcttc |
244 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
7816907 |
tgtctccttccacttttttatctctacttc |
7816878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 7797737 - 7797608
Alignment:
| Q |
115 |
cctttgaagagtgattagtgatgttggaaactattccagcctcaatagtgagtgagttagccattgatgtctttctctctttgaggctcttcttgttcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
7797737 |
cctttgaagagtgattagtgatgttggaaactattccagccttaatagtgagtgagttagccattgatgtcgttctttctttgaggctcttcttgttcat |
7797638 |
T |
|
| Q |
215 |
tgtctccttccacttttttatctctgcttc |
244 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
7797637 |
tgtctccttccacttttttatctctacttc |
7797608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7797851 - 7797796
Alignment:
| Q |
1 |
catagtatcatttatgttcgtaactgtaaagattaatttcatcgtatatgtgtgtg |
56 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
7797851 |
catagtatcatttatgtacgtaactataaagattaatttcattgtatatgtgtgtg |
7797796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7817121 - 7817066
Alignment:
| Q |
1 |
catagtatcatttatgttcgtaactgtaaagattaatttcatcgtatatgtgtgtg |
56 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
7817121 |
catagtatcatttatgtacgtaactataaagattaatttcattgtatatgtgtgtg |
7817066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University