View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_26 (Length: 224)
Name: NF11923_low_26
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 44943998 - 44944189
Alignment:
| Q |
16 |
aagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctttttatctctgagtgtaggtgcggtgattaaaaaactgaca |
115 |
Q |
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| T |
44943998 |
aagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctttttatctcggagtgtaggtgcggtgattaaaaaactgaca |
44944097 |
T |
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| Q |
116 |
tgacaatagcaccttatagactgaacattgcataaaaatgcaacaaggaagcaaatggtaattgaaatacgtttgattgaagaagtactttg |
207 |
Q |
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| T |
44944098 |
tgacaatagcaccttatagactgaacattgcataaaaatgcaacaaggaagcaaatggtaatcgaaatacgtttgattgaagaagtactttg |
44944189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 44945652 - 44945843
Alignment:
| Q |
16 |
aagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctttttatctctgagtgtaggtgcggtgattaaaaaactgaca |
115 |
Q |
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||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||||| |
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| T |
44945652 |
aagggaccaggagtaactagcgcgattcaatgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgaca |
44945751 |
T |
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| Q |
116 |
tgacaatagcaccttatagactgaacattgcataaaaatgcaacaaggaagcaaatggtaattgaaatacgtttgattgaagaagtactttg |
207 |
Q |
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| T |
44945752 |
tgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaagtactttg |
44945843 |
T |
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