View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11923_low_27 (Length: 214)

Name: NF11923_low_27
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11923_low_27
NF11923_low_27
[»] chr7 (3 HSPs)
chr7 (19-132)||(47024126-47024239)
chr7 (19-132)||(21867752-21867865)
chr7 (134-163)||(21867745-21867774)
[»] chr8 (3 HSPs)
chr8 (19-132)||(18166760-18166873)
chr8 (19-132)||(18630314-18630427)
chr8 (23-132)||(15362889-15362998)
[»] chr5 (4 HSPs)
chr5 (19-132)||(1592969-1593082)
chr5 (23-132)||(7955576-7955685)
chr5 (134-163)||(1593060-1593089)
chr5 (134-163)||(7955663-7955692)
[»] chr1 (1 HSPs)
chr1 (19-132)||(34025222-34025335)
[»] chr2 (2 HSPs)
chr2 (19-129)||(604031-604141)
chr2 (23-132)||(12336208-12336317)
[»] chr4 (4 HSPs)
chr4 (19-132)||(30200289-30200402)
chr4 (59-132)||(45112723-45112796)
chr4 (134-163)||(30200282-30200311)
chr4 (134-163)||(45112716-45112745)
[»] chr3 (3 HSPs)
chr3 (134-199)||(20320974-20321037)
chr3 (134-199)||(34151719-34151782)
chr3 (96-132)||(20320960-20320996)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 47024126 - 47024239
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     
T  47024126 tgatattcgagcgcgcatccaccactctgttgcagctgcatgtcaaaggtgttgggcagcttgccagccttcaattaaatggcgtgcaacaacttgaaag 47024225  T
Q  119 agggtactcttgtt 132  Q
    ||||||||||||||    
T  47024226 agggtactcttgtt 47024239  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 21867865 - 21867752
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  21867865 tgatattcgagcgggcatccaccattctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaac 21867766  T
Q  119 agggtactcttgtt 132  Q
    ||||||||||||||    
T  21867765 agggtactcttgtt 21867752  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 21867774 - 21867745
Alignment:
Q  134 acttgaaacagggtactcttgttatgtatt 163  Q
    ||||||||||||||||||||||||||||||    
T  21867774 acttgaaacagggtactcttgttatgtatt 21867745  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 18166760 - 18166873
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  18166760 tgatattcgagcgggcatccaccattctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaac 18166859  T
Q  119 agggtactcttgtt 132  Q
    || |||||||||||    
T  18166860 agagtactcttgtt 18166873  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 18630314 - 18630427
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  18630314 tgatattcgagcgggcatccaccattctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaac 18630413  T
Q  119 agggtactcttgtt 132  Q
    || |||||||||||    
T  18630414 agagtactcttgtt 18630427  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 15362889 - 15362998
Alignment:
Q  23 attcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacaggg 122  Q
    ||||||||| ||||||||||||||||||  | ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||    
T  15362889 attcgagcgggcatccaccattctgttgatgttgcatgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacatgg 15362988  T
Q  123 tactcttgtt 132  Q
    ||||||||||    
T  15362989 tactcttgtt 15362998  T

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Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 1592969 - 1593082
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||    
T  1592969 tgatattcgagcgggcatccaccattctgttgctgttgcatgtcaaaggtgttgggcagtctgccagccttcaattaaatggcgtgtaacaacttgaaac 1593068  T
Q  119 agggtactcttgtt 132  Q
    ||||||||||||||    
T  1593069 agggtactcttgtt 1593082  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 7955576 - 7955685
Alignment:
Q  23 attcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacaggg 122  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||    
T  7955576 attcgagcgggcatccaccattctgttgctgttgcatgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacaggg 7955675  T
Q  123 tactcttgtt 132  Q
    ||||||||||    
T  7955676 tactcttgtt 7955685  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 1593060 - 1593089
Alignment:
Q  134 acttgaaacagggtactcttgttatgtatt 163  Q
    ||||||||||||||||||||||||||||||    
T  1593060 acttgaaacagggtactcttgttatgtatt 1593089  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 7955663 - 7955692
Alignment:
Q  134 acttgaaacagggtactcttgttatgtatt 163  Q
    ||||||||||||||||||||||||||||||    
T  7955663 acttgaaacagggtactcttgttatgtatt 7955692  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 34025222 - 34025335
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  34025222 tgatattcgagcgggcatccaccattctgttgctgttgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcgtgtaacaacttgaaac 34025321  T
Q  119 agggtactcttgtt 132  Q
    || |||||||||||    
T  34025322 agagtactcttgtt 34025335  T

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Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 604141 - 604031
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||    
T  604141 tgatattcgagcgcgcatccaccattctgctgctgttgcatgtcaaaggtgttgggcagtctgccagccttcaattaaatggcgtgtaacaacttgaaac 604042  T
Q  119 agggtactctt 129  Q
    |||||||||||    
T  604041 agggtactctt 604031  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 12336208 - 12336317
Alignment:
Q  23 attcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacaggg 122  Q
    ||||||||| ||||||||||||||||||  | ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||    
T  12336208 attcgagcgggcatccaccattctgttgttgttgcatgtcaaaggtgttgggcagtctgccaaccttcaattaaatggcgtgtaacaacttgaaacatgg 12336307  T
Q  123 tactcttgtt 132  Q
    ||||||||||    
T  12336308 tactcttgtt 12336317  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 30200402 - 30200289
Alignment:
Q  19 tgatattcgagcgcgcatccaccattctgttgcagctgcatgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaac 118  Q
    ||||||||||||| |||||| |||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  30200402 tgatattcgagcgggcatcccccattctgttgttgttgcatgtcaaaggtgttgggcagcctgccaaccttcaattaaatggcgtgtaacaacttgaaac 30200303  T
Q  119 agggtactcttgtt 132  Q
    ||||||||||||||    
T  30200302 agggtactcttgtt 30200289  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 45112796 - 45112723
Alignment:
Q  59 tgtcaaaggtgttgggcagcctgccagccttcaattaaatggcatgcaacaacttgaaacagggtactcttgtt 132  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||    
T  45112796 tgtcaaaggtgttgggcagcctgccaaccttcaattaaatggcgtgtaacaacttgaaacagggtactcttgtt 45112723  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 30200311 - 30200282
Alignment:
Q  134 acttgaaacagggtactcttgttatgtatt 163  Q
    ||||||||||||||||||||||||||||||    
T  30200311 acttgaaacagggtactcttgttatgtatt 30200282  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 45112745 - 45112716
Alignment:
Q  134 acttgaaacagggtactcttgttatgtatt 163  Q
    ||||||||||||||||||||||||||||||    
T  45112745 acttgaaacagggtactcttgttatgtatt 45112716  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 20320974 - 20321037
Alignment:
Q  134 acttgaaacagggtactcttgttatgtattnnnnnnnntaagtatataccgtgaccaatacctttg 199  Q
    ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||    
T  20320974 acttgaaacagggtactcttgttatgtatt--aaaaaataagtatataccctgaccaatacctttg 20321037  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 34151719 - 34151782
Alignment:
Q  134 acttgaaacagggtactcttgttatgtattnnnnnnnntaagtatataccgtgaccaatacctttg 199  Q
    ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||    
T  34151719 acttgaaacagggtactcttgttatgtatt--aaaaaataagtatataccctgaccaatacctttg 34151782  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 20320960 - 20320996
Alignment:
Q  96 aatggcatgcaacaacttgaaacagggtactcttgtt 132  Q
    |||||| | ||||||||||||||||||||||||||||    
T  20320960 aatggcgtacaacaacttgaaacagggtactcttgtt 20320996  T

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