View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_4 (Length: 566)
Name: NF11923_low_4
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 33818399 - 33818866
Alignment:
| Q |
17 |
aaccaagactacgcaggaaatgagtgtgatcaacatgctacatcatgtaactcatcaagagataagattaatttgcccttcatcgtcaaggtcgtctctc |
116 |
Q |
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| T |
33818399 |
aacctagactacgaaggaaatgagtgtgatcaacatgctacatcttgtaactcatcaagagataagattaatttgcccttcatcgtcaaggtcgtctctc |
33818498 |
T |
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| Q |
117 |
aatcgattataattatgattgacaaatggttctgcgaatggaaaacatgtagacccctctttaattttcctagaatctcctcgtgccgtctaatctcatc |
216 |
Q |
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| T |
33818499 |
aatcgattataattatgattgacaaatggttctgcgaatggaaaacatgtagacccctctttaattttcctagaatctcctcgtgccgtctaatctcatc |
33818598 |
T |
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| Q |
217 |
atatattttttgtttatacctaactataatcgtaaggcttttaacgtgtttgaaacattgcaa-ttaggtggttataacagcttg-tgaagtttgaccac |
314 |
Q |
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| T |
33818599 |
atatatattttgtttatacctaactataatcgtaaggcttttaacgtgtttcaagcattgcaatttaggtggttataacagcttgttgaagtttgaccac |
33818698 |
T |
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| Q |
315 |
atgtgacacatttgtcttcatatctatctatctatcaaannnnnnnctctggagtctcaatagtcaataaaaaatatccttttaaaaactagcgtatgtt |
414 |
Q |
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| T |
33818699 |
ctgtg--gcatttgtcttcatatctatctacctatcaattttttttctttggagtttcaatagtcaataaaaaatatcctttcaaaaactagggtatgtt |
33818796 |
T |
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| Q |
415 |
gctaattgtgatgcaca-tattatttaataaaaagcgaaagaatagctcagtatttagctatctatctat |
483 |
Q |
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| T |
33818797 |
gctaattgtgatgcacattattatttaataaaaagcgaaagaatagctcaatatttatttatctatctat |
33818866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 33818889 - 33818967
Alignment:
| Q |
477 |
tatctatctattattataaattgtaaatgcaaaccctattccccaacactaacttatgtttttatctattttgcccttt |
555 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33818889 |
tatctatctattattataaattataaatgcaaaccatattccccaacactaacttatgtttttatctattttgcccttt |
33818967 |
T |
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