View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_5 (Length: 548)
Name: NF11923_low_5
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 119 - 351
Target Start/End: Complemental strand, 4724014 - 4723787
Alignment:
| Q |
119 |
acatgaaccctacttgaatgtattatgtggttgattctctattgtgtgaatctggctcgttatcaccgtttcacatatatgaactattgagatttgttta |
218 |
Q |
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| T |
4724014 |
acatgaaccctacttgaatgtattatgtggttgattctctattgtgtgaatctggctcgttatcacggtttcacatatatgaactattgagatttgttta |
4723915 |
T |
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| Q |
219 |
aattggactattgatgtgaaccttgataataaatatatagtgtgaaatgtgcactataaaatgtgactacctcttgagtaagaaccttgatataaaccaa |
318 |
Q |
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| T |
4723914 |
aattggactattgatgtgaaccttgataataa----atagtgtgaaatgtgcactataaaatgtgactaccccttgagtaagaaccttgatataaaccaa |
4723819 |
T |
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| Q |
319 |
aggtacatcatggggaaattactaagtggataa |
351 |
Q |
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| T |
4723818 |
aggtacatca-gggggaattactaagtggataa |
4723787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4724137 - 4724082
Alignment:
| Q |
1 |
atagacgagatagagagatgcgataaaagagaaataggagacatattggaaacatat |
57 |
Q |
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| T |
4724137 |
atagacgagatagagagatgtga-aaaagagaaataggagacatattggaaacatat |
4724082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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