View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_7 (Length: 499)
Name: NF11923_low_7
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 490
Target Start/End: Original strand, 1573353 - 1573839
Alignment:
| Q |
5 |
caattgggacttattttattgaaaatgatacatggattcctgataacccacttgaggacgtgggtattgggttgcttttggactatggaatatactatgc |
104 |
Q |
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| T |
1573353 |
caattgggacttattttattgaaaatgatacatggattcctgataacccacttgaggatgtgggtattgggttgcttttggactatggaatatactatgc |
1573452 |
T |
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| Q |
105 |
ttcaaagactttctatgatcaagtgnnnnnnngaaggattttgtggggatggattaatgagactgatgctgaaagtgatgacttggaaaaaggttgggca |
204 |
Q |
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| T |
1573453 |
ttcaaagactttctatgatcaagtgaaaaaaagaaggattttgtggggatggattaatgagactgatgctgaaagtgatgacttggaaaaaggttgggca |
1573552 |
T |
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| Q |
205 |
tctcttcgggtatgtattatacataacatgctgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgttggatagagcaattcataaaatct |
304 |
Q |
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| T |
1573553 |
tctcttcaggtatgtattatacataacatactgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgtttgatagagcaattcataaaacct |
1573652 |
T |
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| Q |
305 |
tgtacac-annnnnnncttcagacaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaagaagtagaaagc |
403 |
Q |
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| T |
1573653 |
tgtacacaatttttttcttcagacaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaagaagtagaaagc |
1573752 |
T |
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| Q |
404 |
ttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctctattgttccattgaacattactcaagcaacacaggtt |
490 |
Q |
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| T |
1573753 |
ttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctctgttgttccattgaacattactcaagcaacacaggtt |
1573839 |
T |
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