View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_8 (Length: 496)
Name: NF11923_low_8
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_8 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 2593791 - 2593315
Alignment:
| Q |
11 |
tgagatgtgattgacaaaatttttagaagccggttataatattgactatatttacaaaataattgctaaattgtatattttaatatgacactataaaagt |
110 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2593791 |
tgagatatgattgacaaaaattttagaagccggttataatatcgactatatttactaaataattgctaaattgtatattttaatatgatactataaaagt |
2593692 |
T |
|
| Q |
111 |
gttgcgtctaagctatgactacacattttaagtgttcctacttattcatatttagggcaacaagtaacaattgtagccacctatgacaataattnnnnnn |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
2593691 |
gttgcgtctaagctataactacacattttaagtgttcctacttattcatatttagggcaacaagtaataatcgtagccacctatgacaataattaaaaaa |
2593592 |
T |
|
| Q |
211 |
nn----ttactttagatgccacaaaaaagggcgcaaaaatcaagaagaaacgtcgccttaggaaaacgcttgcatcgaagacacttgaaaaacgtcccat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |
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| T |
2593591 |
aaaaaattactttagatgccacaaaaaagggcgcaaaaatcaagaagaaacgtcgcattaggaaaacgcttgcatcgaagacacttgaaaaacgt-cctt |
2593493 |
T |
|
| Q |
307 |
tttttgtaggtaacttttacccatattcaattgttggtggaaaggataaatattgagggggtattaagtggttatttcatgctaacaaaatc-----ata |
401 |
Q |
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| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||| |
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| T |
2593492 |
tctttgtaggtaactttaacccatattcagttgttggtggaaaggataaatattgaggtgatattaagtggttctttcatgctaacaaaatcatcaaata |
2593393 |
T |
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| Q |
402 |
agagtccaatcccgtaattaagtacttttagtatacaactctttcttggtttcacatgagtgtacattgtattgttag |
479 |
Q |
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| T |
2593392 |
agagtccaatcccataattaagtacttttagtatacaactctttcttggtttcacatgagtgtatattgtattgttag |
2593315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 2635853 - 2635492
Alignment:
| Q |
13 |
agatgtgattgacaaaatttttagaagccggttataatattgactatatttacaaaataattgctaaattgtatattttaatatgacactataaaagtgt |
112 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||| |
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| T |
2635853 |
agatatgattgacaaattttttt-aagccggttataatc--gactatatttacaaaataattgctaaactgtatatttcaatatgacactgtaaa-gtgt |
2635758 |
T |
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| Q |
113 |
tgcgtctaagctatgactacacattttaagtgttcctacttattcatatttagggcaacaagtaacaattgtagccacctatgacaataatt-nnnnnnn |
211 |
Q |
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||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||||||||||||||| |
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| T |
2635757 |
tgcctataagctatgactacacattttaagtgttcctactgattcatatttagggaaacaagcaataattgtagccgcctatgacaataattaaaaaaac |
2635658 |
T |
|
| Q |
212 |
nttactttagatgcc-----acaaaaaagggcgcaaaaatcaagaagaaacgtcgccttaggaaaacgcttgcatcgaagacacttgaaaaacgtcccat |
306 |
Q |
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| T |
2635657 |
attgctttagatgccccaaaaaaaaaaagagcccaatgatcaagaaaaaacgtcgccttagacaaacgctcgcatcgaagacgcttgaaaaatgtcccat |
2635558 |
T |
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| Q |
307 |
tttttgtaggtaacttttacccatattcaattgttggtggaaaggataaatattgagggggtattaa |
373 |
Q |
| |
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||||| |||| ||||| |||||| ||||||||||||||||||| ||||||| |||||| | |||||| |
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| T |
2635557 |
ttttt-taggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgatattaa |
2635492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 4156 - 4517
Alignment:
| Q |
13 |
agatgtgattgacaaaatttttagaagccggttataatattgactatatttacaaaataattgctaaattgtatattttaatatgacactataaaagtgt |
112 |
Q |
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|||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||| |
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| T |
4156 |
agatatgattgacaaattttttt-aagccggttataatc--gactatatttacaaaataattgctaaactgtatatttcaatatgacactgtaaa-gtgt |
4251 |
T |
|
| Q |
113 |
tgcgtctaagctatgactacacattttaagtgttcctacttattcatatttagggcaacaagtaacaattgtagccacctatgacaataatt-nnnnnnn |
211 |
Q |
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||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||||||||||||||| |
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| T |
4252 |
tgcctataagctatgactacacattttaagtgttcctactgattcatatttagggaaacaagcaataattgtagccgcctatgacaataattaaaaaaac |
4351 |
T |
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| Q |
212 |
nttactttagatgcc-----acaaaaaagggcgcaaaaatcaagaagaaacgtcgccttaggaaaacgcttgcatcgaagacacttgaaaaacgtcccat |
306 |
Q |
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|| ||||||||||| | ||||||| || ||| |||||||| |||||||||||||| ||||||| ||||||||||| ||||||||| ||||||| |
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| T |
4352 |
attgctttagatgccccaaaaaaaaaaagagcccaatgatcaagaaaaaacgtcgccttagacaaacgctcgcatcgaagacgcttgaaaaatgtcccat |
4451 |
T |
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| Q |
307 |
tttttgtaggtaacttttacccatattcaattgttggtggaaaggataaatattgagggggtattaa |
373 |
Q |
| |
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||||| |||| ||||| |||||| ||||||||||||||||||| ||||||| |||||| | |||||| |
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| T |
4452 |
ttttt-taggaaacttctacccacattcaattgttggtggaaaagataaatgttgaggtgatattaa |
4517 |
T |
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