View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11923_low_9 (Length: 477)
Name: NF11923_low_9
Description: NF11923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11923_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 7798418 - 7797971
Alignment:
| Q |
18 |
ctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaagcaagagtagccatccaa |
117 |
Q |
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| T |
7798418 |
ctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaagcaagagtagccatccaa |
7798319 |
T |
|
| Q |
118 |
cccaactattaattaataatcaacattcaagaaacaagtaattataattataaatttaatccaaatggacaaaaatgcatctaatttacaacataattta |
217 |
Q |
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| T |
7798318 |
cccaactattaattaataatcaacattcaagaaacaagtaattataattataaatttaatccaaatggacaaaaatgcatctaatttacaacataattta |
7798219 |
T |
|
| Q |
218 |
ttattttcaataaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7798218 |
ttattttcaataaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaa |
7798119 |
T |
|
| Q |
318 |
tacccttcaaccctttttaaatggcttatggaatttgtttagcatatagaagcataatcactcgaataccaccgtatcactaattcaatacaaatcactt |
417 |
Q |
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| T |
7798118 |
cacccttcaaccctttttaaatggcttatggaatttgtttagtatatggaagcataatcactcgaataccaccgtatcactaattcaatacaaatcactt |
7798019 |
T |
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| Q |
418 |
acgggaatttgaaaaaagatatcatggaagaattttcttctccacctt |
465 |
Q |
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| T |
7798018 |
acgggaattggaaaaaagatatcatggaagaattttcttctccacctt |
7797971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 7817688 - 7817241
Alignment:
| Q |
18 |
ctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaagcaagagtagccatccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7817688 |
ctttggaaaggtgcttgcaagaacataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaagcaagagtagccatccaa |
7817589 |
T |
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| Q |
118 |
cccaactattaattaataatcaacattcaagaaacaagtaattataattataaatttaatccaaatggacaaaaatgcatctaatttacaacataattta |
217 |
Q |
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| T |
7817588 |
cccaactattaattaataatcaacattcaagaaacaagtaattataattataaatttaatccaaatggacaaaaatgcatctaatttacaacataattta |
7817489 |
T |
|
| Q |
218 |
ttattttcaataaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaa |
317 |
Q |
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| T |
7817488 |
ttattttcaataaaaagaaaatggcaacgtgaactaattaatttaagatttattctaattacacccatgaaatttcggttacactccaatttaacaaaaa |
7817389 |
T |
|
| Q |
318 |
tacccttcaaccctttttaaatggcttatggaatttgtttagcatatagaagcataatcactcgaataccaccgtatcactaattcaatacaaatcactt |
417 |
Q |
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| T |
7817388 |
cacccttcaaccctttttaaatggcttatggaatttgtttagtatatggaagcataatcactcgaataccaccgtatcactaattcaatacaaatcactt |
7817289 |
T |
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| Q |
418 |
acgggaatttgaaaaaagatatcatggaagaattttcttctccacctt |
465 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7817288 |
acgggaattggaaaaaagatatcatggaagaattttcttctccacctt |
7817241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 41132882 - 41132942
Alignment:
| Q |
40 |
acataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaag |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
41132882 |
acataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaag |
41132942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 21539826 - 21539777
Alignment:
| Q |
417 |
tacgggaatttgaaaaaag-atatcatggaagaattttcttctccacctt |
465 |
Q |
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|||||||||| |||||||| | ||||| |||||||||||||||||||||| |
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| T |
21539826 |
tacgggaattggaaaaaaggaaatcatagaagaattttcttctccacctt |
21539777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 465
Target Start/End: Original strand, 20637114 - 20637163
Alignment:
| Q |
417 |
tacgggaatttgaaaaaag-atatcatggaagaattttcttctccacctt |
465 |
Q |
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|||||||||| |||||||| | ||||| |||||||||||||||||||||| |
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| T |
20637114 |
tacgggaattggaaaaaaggaaatcatagaagaattttcttctccacctt |
20637163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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