View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11924_low_1 (Length: 470)
Name: NF11924_low_1
Description: NF11924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11924_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 29 - 451
Target Start/End: Original strand, 43396205 - 43396630
Alignment:
| Q |
29 |
cagtgagatactgttatttttgaactgccaaa-----gagtaaaatatcttggtatagctgagattataattgaaggagaggggagagatttatatttca |
123 |
Q |
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| T |
43396205 |
cagtgagatactgttatttttgaactgccaaattaaagagtaaaatatcttggtatagctgagattataattgaaggagaggggagagatttat--ttca |
43396302 |
T |
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| Q |
124 |
atgctttgtttttggttgagaggaggtgaggggagataatagtgaattaaaattaggggtgtggttacgttgcgatctttgatattgcagacaaatgcag |
223 |
Q |
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| T |
43396303 |
atgctttgtttttggttgagagtaggctaggggagataatagtgaattaaaattaggggtgtggttgcgttgcgatctttgatattgcagacaaatgcag |
43396402 |
T |
|
| Q |
224 |
ttgatgcagatgcaatgtagctgcggagaccactaaagtcattatgttgtggtcgtgcatataattgttgacatcacacgggaaggagcaagatcttcca |
323 |
Q |
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| T |
43396403 |
ttgatgcagatgcaatgtagctgcggagaccactaaagtcattatgttgtggtcgtgcatatagttgttgacatcacacgggaaggagcgagatcttcca |
43396502 |
T |
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| Q |
324 |
attccatctcaccaataaaattattaaaaagatacatctccaataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacac |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396503 |
attccatctcaccaataaaattattaaaaagatacatctccaataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacac |
43396602 |
T |
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| Q |
424 |
cacattaaaatctccaagaatacaccac |
451 |
Q |
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| T |
43396603 |
cacattaaaatctccaagaatacaccac |
43396630 |
T |
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