View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11925_high_13 (Length: 204)
Name: NF11925_high_13
Description: NF11925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11925_high_13 |
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| [»] scaffold0899 (1 HSPs) |
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Alignment Details
Target: scaffold0899 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 2282 - 2168
Alignment:
| Q |
1 |
tttgattaaataatggaataaatattaaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggtttccgtggatatatggttcgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
2282 |
tttgattaaataatggaataaatattaaattggtttctggtggaaaatatgggtggtgataatcgaaattcttggttttcgtggatatatggtttgtagg |
2183 |
T |
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| Q |
101 |
aaaaagtatttccct |
115 |
Q |
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||||||||||||||| |
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| T |
2182 |
aaaaagtatttccct |
2168 |
T |
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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 39977392 - 39977504
Alignment:
| Q |
1 |
tttgattaaataatggaataaatattaaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggtttccgtggatatatggttcgtagg |
100 |
Q |
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| T |
39977392 |
tttgattaaataatagaataaatattaaattgatttttggtggaaaatatgg-tggtgataagtgaaattcttggttttcgtggatatatggttcgtagg |
39977490 |
T |
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| Q |
101 |
aaaaagtatttccc |
114 |
Q |
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|||||||||||||| |
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| T |
39977491 |
aaaaagtatttccc |
39977504 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 26381629 - 26381578
Alignment:
| Q |
64 |
tgaaattcttggtttccgtggatatatggttcgtaggaaaaagtatttccct |
115 |
Q |
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| T |
26381629 |
tgaaattcttggttttcgtggatatatggttcgtaggaaaaagcatttccct |
26381578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 28868131 - 28868183
Alignment:
| Q |
26 |
taaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggttt |
78 |
Q |
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| T |
28868131 |
taaattggtctttggtgggaaacatgagtggtggtaagtgaaatttttggttt |
28868183 |
T |
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Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 11070177 - 11070269
Alignment:
| Q |
19 |
taaatattaaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggtttccgtggatatatggttcgtaggaaaaagtattt |
111 |
Q |
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| T |
11070177 |
taaatattaatttggtttttggtggaaaacatgggtggtggtaagtgtaattcttggttttcgtggttttgtggttcgtgggaaaaagcattt |
11070269 |
T |
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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 46258885 - 46258826
Alignment:
| Q |
19 |
taaatattaaattggtttttggtggaaaacatgggtggtgataagtgaaattcttggttt |
78 |
Q |
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| T |
46258885 |
taaatattaatttggtttttggtggaaaacatgggtggtggtaagtgtaattcttggttt |
46258826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 40031804 - 40031855
Alignment:
| Q |
135 |
tagatgaagtgtaacacattcatataatgaggtattcatcctacactacttt |
186 |
Q |
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| T |
40031804 |
tagatgaagtgtaacacagacatataatgaggtattcatcctacactacttt |
40031855 |
T |
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