View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11925_high_3 (Length: 354)
Name: NF11925_high_3
Description: NF11925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11925_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 44 - 343
Target Start/End: Complemental strand, 4253280 - 4252971
Alignment:
| Q |
44 |
tggtgagttcaatttacaaacatatattaccaagaatgagagtacgtaacaatgatgccaaaacaaagaagaagaaaactgctgctagtgctgccaaaaa |
143 |
Q |
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| T |
4253280 |
tggtgagttcaatttacaaacatatattaccaagaatgagagtacgtaacgatgatgccaaaacaaagaagaagaaaacagttgctagtgctgccaaaaa |
4253181 |
T |
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| Q |
144 |
gaagaaaaca----gttgctagtgctgct---aagaagaaaataaaaactactaacgaatacga---atacccaagtttcaaaccaaaatatccaagaat |
233 |
Q |
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| T |
4253180 |
gaagaaaacaaatgctagctagtgctgctaagaagaagaaaataaaaactactaccgaatacgaattatacccaagtttcaaaccaaaatatccaagaat |
4253081 |
T |
|
| Q |
234 |
gagagtaagcaatatttggttaacaactaccgtttgtttcgattgcgatacaaacactactcctctttggagtagtgatcctacgggttccaaggtaatt |
333 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4253080 |
gagagtaagcaatatttggttaacaattaccgtttgtttcgattgcgatacaaacactactcctctttggagtagtgatcctacgggttccaaggtaatt |
4252981 |
T |
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| Q |
334 |
agttcatctc |
343 |
Q |
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|||||||||| |
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| T |
4252980 |
agttcatctc |
4252971 |
T |
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