View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11925_low_2 (Length: 393)
Name: NF11925_low_2
Description: NF11925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11925_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 28472054 - 28471691
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28472054 |
aaatagttgatgataatgataacaaaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaattgaattaatacttcc |
28471955 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
28471954 |
gtttcactctcctcatgatcttccagcactagaatccatcacaattggtagttgtaataagctgaaatacatatttggcaaatatgtcaaacttggttcc |
28471855 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccattt |
300 |
Q |
| |
|
||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||| |
|
|
| T |
28471854 |
ctcataaatatgaagcttgatggtttaccaaatatgattgacattttccctgaatgttatggtg-------taca-----tgagaggtcatcttccattt |
28471767 |
T |
|
| Q |
301 |
ctagatatgcttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattg |
376 |
Q |
| |
|
|| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28471766 |
ctggatatgcttctaagccacaaacacaatcaggtccaatcaaacgcaatatcttttcatggactaatgtatattg |
28471691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 28492095 - 28491732
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28492095 |
aaatagttgatgataatgataacaaaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaattgaattaatacttcc |
28491996 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
28491995 |
gtttcactctcctcatgatcttccagcactagaatccatcacaattggtagttgtaataagctgaaatacatatttggcaaatatgtcaaacttggttcc |
28491896 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccattt |
300 |
Q |
| |
|
||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||| |
|
|
| T |
28491895 |
ctcataaatatgaagcttgatggtttaccaaatatgattgacattttccctgaatgttatggtg-------taca-----tgagaggtcatcttccattt |
28491808 |
T |
|
| Q |
301 |
ctagatatgcttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattg |
376 |
Q |
| |
|
|| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28491807 |
ctggatatgcttctaagccacaaacacaatcaggtccaatcaaacgcaatatcttttcatggactaatgtatattg |
28491732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 27910158 - 27910477
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||| |||||||||||||| |
|
|
| T |
27910158 |
aaataattgatgataatgacagcacaagtcatggctcaatgtttaagaaactgaaagttcttagtatttatagttgtccaagaattgaattaatacttcc |
27910257 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27910258 |
gtttcaatcttctcatgatcttccagcattagaatccatcacaattgatagttgtgataagctgaaatacatatttggcaaagatgtcaaacttggttcc |
27910357 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccattt |
300 |
Q |
| |
|
||| |||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
27910358 |
ctcataaatatggagcttagtggtttaccaaaaatgattgacattttccctatatgttatggtgccatgacttcacccattaagaggtcatcttccattt |
27910457 |
T |
|
| Q |
301 |
ctagatatgcttctaagcca |
320 |
Q |
| |
|
|| || || |||| |||||| |
|
|
| T |
27910458 |
ctggagatacttccaagcca |
27910477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28130325 - 28130527
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130325 |
aaatagtcgatgataatgataacacaagtcatggctcaatgtttcagaaattgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
28130424 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
28130425 |
gtttcactctcctcatgatcttccaacactagaatccatcacaattaaaagttgtgataagctgcagtacatatttggcaaagatgtcaaacttggttcc |
28130524 |
T |
|
| Q |
201 |
ctc |
203 |
Q |
| |
|
||| |
|
|
| T |
28130525 |
ctc |
28130527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 28513076 - 28512897
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28513076 |
aaatagttgatgataatgataacaaaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaattgaattaatacttcc |
28512977 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggca |
180 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
28512976 |
gtttcactctcctcatgatcttccagcactagaatccatcacaattgatagttgtaataagctgaaatacatatttggca |
28512897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 28047789 - 28048165
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||||||||||||||| | | ||||||||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
28047789 |
aaatagttgatgataataacagcacaagtcaaggttcaatgtttcagaaattgaatgttcttagtattaagaagtgtccaagaattgaaataatacttcc |
28047888 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
28047889 |
gtttcaatctgctcatgatcttccagcactagaatccatcaaaattgaaagttgtgataagctgaaatacatatttggcaaagatgtcaaatttggttct |
28047988 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccattt |
300 |
Q |
| |
|
| | | ||| |||||| |||||||||||| | ||||||||||||| |||||| || | | | | ||| | ||||||||||||||||||||| |
|
|
| T |
28047989 |
ttaaaagaaatgaggcttgatggtttaccaaatttcattgacattttccaagaatgtaatcctacaatgtctttgtccattaagaggtcatcttccattt |
28048088 |
T |
|
| Q |
301 |
ctagatatgcttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattgt |
377 |
Q |
| |
|
|| || || |||| ||||||| | |||| | | |||| ||| ||||||| |||||||||||| || |||||||| |
|
|
| T |
28048089 |
ctggagatacttccaagccacaagcacaatcagagtcaattaaatgcaatatgttttcatggactgatatatattgt |
28048165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 27998962 - 27999329
Alignment:
| Q |
10 |
atgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttccgtttcactc |
109 |
Q |
| |
|
|||||||||| | ||||||||| |||||||| |||||||||||| | ||||| ||||| | || ||||||||||| |||| |||||||||||||| || |
|
|
| T |
27998962 |
atgataatgaaagcacaagtcaaggctcaatatttcagaaactggagtttcttggtatttataattgtccaagaattgaatcaatacttccgtttctcta |
27999061 |
T |
|
| Q |
110 |
tcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctcgtaaag |
209 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
27999062 |
tgctcatgatcttccagcactagaatccatcagaattgaaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttggttccctcagagaa |
27999161 |
T |
|
| Q |
210 |
atggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccatttctagatatg |
309 |
Q |
| |
|
|| || ||||| | ||||||||||||||||||||| ||||| |||||| || || | | | ||| | |||||| | |||||||||||||| || ||| |
|
|
| T |
27999162 |
attgatcttgatgatttaccaaatatgattgacatattcccagaatgtaatcgtacaatgtctttgtccattaagaagacatcttccatttctggagatg |
27999261 |
T |
|
| Q |
310 |
cttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattgt |
377 |
Q |
| |
|
|||| || |||| |||||| | | ||||||||| ||||||| ||||||||||| || |||||||| |
|
|
| T |
27999262 |
cttccaacccacaaacacaatcagagccaatcaaatgcaatatattttcatggacagatatatattgt |
27999329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 19050388 - 19050012
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||| |||||||| || |||||||||||| | |
|
|
| T |
19050388 |
aaatagttgatgataatgacaacacaagtcatggcgcaatgcttcagaatctgaaagttcttaatattaagaattgtccaaggattgaattaatacttgc |
19050289 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||||||||||||||| | |||||||||| ||||||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
19050288 |
atttcactctgctcatgatctaccagcattagaatccatcacaatagaacattgtgataaggtgaaatacatatttgaccaagatctcaaacttggttcc |
19050189 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccattt |
300 |
Q |
| |
|
||| | | | ||||| | || |||| ||| |||| |||||||||||||||||| || || ||| | ||| | ||||| |||||||||| | |
|
|
| T |
19050188 |
ctcaaacaattcaagcttcatggcataccgaatttgatcgacattttccctgaatgtaatcgtaccatgtctttcgccattaaggaagcatcttccatat |
19050089 |
T |
|
| Q |
301 |
ctagatatgcttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattgt |
377 |
Q |
| |
|
|| |||||||||| ||||||| | ||| | | || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19050088 |
ctggatatgcttccaagccacaagaacaatcagaccctatcaaatgcaatatcttttcatggactaatgtatattgt |
19050012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 28144262 - 28144629
Alignment:
| Q |
10 |
atgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttccgtttcactc |
109 |
Q |
| |
|
|||||||||| | ||||||||| |||||||| |||||||||||| | |||||||||||| |||| ||||| | | ||||| |||||||||||| || |
|
|
| T |
28144262 |
atgataatgaaagcacaagtcaaggctcaatatttcagaaactggaggttcttagtattgagaaatgtccggcacttgaatttgtacttccgtttctcta |
28144361 |
T |
|
| Q |
110 |
tcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctcgtaaag |
209 |
Q |
| |
|
| |||||||| ||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | ||| |||||||| || |
|
|
| T |
28144362 |
tgctcatgattttccagcactagaatccatcacaattgaaagttgtgataatctgaaatacatatttggcaaagatgtccagcttggttccctcaaaaca |
28144461 |
T |
|
| Q |
210 |
atggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccatttctagatatg |
309 |
Q |
| |
|
||||||||| | | |||||||| | || ||||||||||| ||||| || || ||| ||||||| | ||||||||||||||||||||||| || ||| |
|
|
| T |
28144462 |
atggagcttcatgacataccaaatttcatcgacattttcccaaaatgtaatcgtaccatgacttcatccattaagaggtcatcttccatttctggagatg |
28144561 |
T |
|
| Q |
310 |
cttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattgt |
377 |
Q |
| |
|
|||| ||||||| | ||| | | ||||||||| ||||||| |||||||||||| || |||||||| |
|
|
| T |
28144562 |
cttccaagccacaagaacaatcagagccaatcaaatgcaatatgttttcatggactgatatatattgt |
28144629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 17749068 - 17748692
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||| |||||||| || |||||||||||| | |
|
|
| T |
17749068 |
aaatagttgatgataatgacaacacaagtcatggcgcaatgcttcagaatctgaaagttcttaatattaagaattgtccaaggattgaattaatacttgc |
17748969 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||||||||||||||| | |||||||||| ||||||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
17748968 |
atttcactctgctcatgatctaccagcattagaatccatcacaatagaacattgtgataaggtgaaatacatatttgaccaagatctcaaacttggttcc |
17748869 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccattt |
300 |
Q |
| |
|
||| | | | ||||| | || |||| ||| |||| |||||||||||||||||| || || ||| | ||| | ||||| |||||||||| | |
|
|
| T |
17748868 |
ctcaaacaattcaagcttcatggcataccgaatttgatcgacattttccctgaatgtaatcgtaccatgtctttcgccattaaggaagcatcttccatat |
17748769 |
T |
|
| Q |
301 |
ctagatatgcttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattgt |
377 |
Q |
| |
|
|| |||||||||| |||||| | | | | | || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17748768 |
ctggatatgcttcccagccacaagaaaaatcagaccctatcaaatgcaatatcttttcatggactaatgtatattgt |
17748692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 28079779 - 28080035
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||||||||||||||| | | ||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||| | | ||||| |||||||| |
|
|
| T |
28079779 |
aaatagttgatgataataacagcacaagtcacggctcaatatttcagaaactggaggttcttagtattaagaagtgtccagaacttgaatttatacttcc |
28079878 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||| |||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| ||| ||||| |
|
|
| T |
28079879 |
gtttctctctacccatgatcttccagcactagaatccatcacaataaaaagttgtgataagctgaaatacatgtttggccaagatgtcctgcttggttcc |
28079978 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgt |
257 |
Q |
| |
|
|| ||| |||||||||| || |||| ||| | || ||||||||||| |||||| |
|
|
| T |
28079979 |
gtcaaaaaaatggagcttggtggcataccgaatttcatcgacattttcccagaatgt |
28080035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 11409166 - 11409415
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||| |||||||||||||| || ||||||| |||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11409166 |
aaatagttgatgataatgacatcgcaagtcatggctcattgtttcagaaactggaaattcttaggattaagaagtgtccaaaaattgaattaatacttcc |
11409265 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||| |||| || |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||| ||||| ||||| |
|
|
| T |
11409266 |
acttctctctgctggtgatcttccagcactagaatccatcacaatgaaaagttgtgatttgctgaaatacatatttgacaaaaatgttgaacttggttcc |
11409365 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccc |
250 |
Q |
| |
|
||| | | |||||||||| | |||||||| | |||||||||||||| |
|
|
| T |
11409366 |
ctcaaacaattggagcttgataggataccaaatttcattgacattttccc |
11409415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 28178402 - 28178658
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttcc |
100 |
Q |
| |
|
||||| |||||| ||||| || |||||||||||||||||||||| |||||| |||||||||| | || ||| ||||| ||||| |||||||||||||| |
|
|
| T |
28178402 |
aaataattgatgctaatggcaatacaagtcatggctcaatgtttccgaaactaaaagttcttattgttgagagctgtccgagaattgaattaatacttcc |
28178501 |
T |
|
| Q |
101 |
gtttcactctcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttcc |
200 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| ||||||||| ||||| | |||||| ||| |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
28178502 |
gtttctctctactcatgatcttccagcactaaaatccatcaaaatagaagattgtgacaagttgaaatacatatttggtcaagatgtcaaacttggttcg |
28178601 |
T |
|
| Q |
201 |
ctcgtaaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgt |
257 |
Q |
| |
|
||| ||| |||||||||| || | || ||| |||| ||||||||||| |||||| |
|
|
| T |
28178602 |
ctcaaaaaattggagcttgatggcattccgaatttgatcgacattttcccagaatgt |
28178658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 205 - 376
Target Start/End: Complemental strand, 28512896 - 28512737
Alignment:
| Q |
205 |
taaagatggagcttgacggtttaccaaatatgattgacattttccctgaatgttatggtgccacgacttcacctgttaagaggtcatcttccatttctag |
304 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| | |
|
|
| T |
28512896 |
taaatatgaagcttgatggtttaccaaatatgattgacattttccctgaatgttatggtgt---------acatg---agaggtcatcttccatttctgg |
28512809 |
T |
|
| Q |
305 |
atatgcttctaagccaccaacacagttgggtccaatcaaacgcaatatcttttcatggactaatgtatattg |
376 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28512808 |
atatgcttctaagccacaaacacaatcgggtccaatcaaacgcaatatcttttcatggactaatgtatattg |
28512737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 27963147 - 27963313
Alignment:
| Q |
37 |
caatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttccgtttcactctcctcatgatcttccagctctagaatc |
136 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || ||||||||||| |||||||||||||| || | ||| |||||||| ||||| | |||||||| |
|
|
| T |
27963147 |
caatgtttcagaaactggaagttcttactattatcaattgtccaagaatagaattaatacttccattcaaatctgctcatgattttccatcactagaatc |
27963246 |
T |
|
| Q |
137 |
catcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctc |
203 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
27963247 |
caccacaatagcaagttgtgataagctgaaatacatatttggcaaaaatgttgaacttggttccctc |
27963313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 257
Target Start/End: Complemental strand, 27464070 - 27463840
Alignment:
| Q |
27 |
agtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttccgtttcactctcctcatgatcttccag |
126 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||| ||| |||| |||||| | | ||||| ||| || |||||| ||| ||||||||||||||| |
|
|
| T |
27464070 |
agtcatggctcaatgttgccaaaactcaaagttcttacaattgagaactgtccagaacttgaatttatattttcgtttccctcggctcatgatcttccag |
27463971 |
T |
|
| Q |
127 |
ctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctcgtaaagatggagcttgacggttt |
226 |
Q |
| |
|
| || ||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||| |||| ||||||| | || ||| ||||||| || | |
|
|
| T |
27463970 |
cagtacaatccatcagaataagaagttgtgataagcttaaatacatatttggcaaaaatgtcccacttggttcccttgaaacaatgaagcttgatggcat |
27463871 |
T |
|
| Q |
227 |
accaaatatgattgacattttccctgaatgt |
257 |
Q |
| |
|
||||||| ||||||| |||||||| |||||| |
|
|
| T |
27463870 |
accaaatttgattgatattttcccagaatgt |
27463840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 26624901 - 26624953
Alignment:
| Q |
9 |
gatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttct |
61 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
26624901 |
gatgataatgataacaagagtcatggctctatgtttcaaaaactaaaatttct |
26624953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 8694418 - 8694206
Alignment:
| Q |
8 |
tgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaagtgtccaagaatcgaattaatacttccgtttcac |
107 |
Q |
| |
|
|||||||||||| | ||||||||| |||| |||||||||||||||| ||||| |||||||| |||| |||||||| | ||||||||||||||||||| | |
|
|
| T |
8694418 |
tgatgataatgacagcacaagtcaaggcttaatgtttcagaaactggaagttattagtattgagaaatgtccaagctttgaattaatacttccgtttctc |
8694319 |
T |
|
| Q |
108 |
tc---tcctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctcg |
204 |
Q |
| |
|
|| ||| | ||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
8694318 |
tcagtgtttcagaaatgtccggcactaatatccatcacaataaaaagttgtgataagctgaaatacatatttggccaagatctcaagcttgaatccctcg |
8694219 |
T |
|
| Q |
205 |
taaagatggagct |
217 |
Q |
| |
|
||| |||||||| |
|
|
| T |
8694218 |
aaaaaatggagct |
8694206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 9329709 - 9329571
Alignment:
| Q |
112 |
ctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctcgtaaagat |
211 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||| |||| |||| | | |
|
|
| T |
9329709 |
ctcatgatcttccaacactaaaatccatcataataaaaagttgtgataagctgaattacatatttggtgaagatgtcaaacttggttctctcgaatcatt |
9329610 |
T |
|
| Q |
212 |
ggagcttgacggtttaccaaatatgattgacattttccc |
250 |
Q |
| |
|
|||| |||| || |||||||| |||| ||||||||||| |
|
|
| T |
9329609 |
ggagtttgatggcataccaaatttgatcgacattttccc |
9329571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 9383492 - 9383354
Alignment:
| Q |
112 |
ctcatgatcttccagctctagaatccatcacaataggaagttgtgataagctgaaatacatatttggcaaagatgtcaaacttagttccctcgtaaagat |
211 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||| |||| |||| | | |
|
|
| T |
9383492 |
ctcatgatcttccaacactaaaatccatcataataaaaagttgtgataagctgaattacatatttggtgaagatgtcaaacttggttctctcgaatcatt |
9383393 |
T |
|
| Q |
212 |
ggagcttgacggtttaccaaatatgattgacattttccc |
250 |
Q |
| |
|
|||| |||| || |||||||| |||| ||||||||||| |
|
|
| T |
9383392 |
ggagtttgatggcataccaaatttgatcgacattttccc |
9383354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9330000 - 9329928
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaa |
73 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| |||||||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
9330000 |
aaataattgatgataatgaaagcacaagtcaaggctcaatgtttaagaaactggaagttattagtattgagaa |
9329928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9383783 - 9383711
Alignment:
| Q |
1 |
aaatagttgatgataatgataacacaagtcatggctcaatgtttcagaaactgaaagttcttagtattaagaa |
73 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| |||||||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
9383783 |
aaataattgatgataatgaaagcacaagtcaaggctcaatgtttaagaaactggaagttattagtattgagaa |
9383711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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