View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11925_low_9 (Length: 239)
Name: NF11925_low_9
Description: NF11925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11925_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23676973 - 23677195
Alignment:
| Q |
1 |
ccatggttgtatacatgattcatttgataaagaaaagggttactgtttatagcatctaaaggtgaaatgagtgaaggatcgtaaagagaaggtaaaggtg |
100 |
Q |
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| T |
23676973 |
ccatggttgtatacatgattcatttgataaagaaaagggttactgtttatagcatctaaaggtgaaatgagtgaaggatcgtaaagagaaggtaaaggtg |
23677072 |
T |
|
| Q |
101 |
aataattagggttaagggtgggtgaagattcaatgaaacttgtttggttttgagataaataacgaagtttttctcttctactttgttgtgggatatgata |
200 |
Q |
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| T |
23677073 |
aaaaactagggttaagggtgggtgaagattcaatgaaacttgtttggttttgagataaataacgaagtttttctcttctactttgttgtgggatatgata |
23677172 |
T |
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| Q |
201 |
ataattttccaaaccctcctcag |
223 |
Q |
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| T |
23677173 |
ataattttcaaaaccctcctcag |
23677195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 40322371 - 40322425
Alignment:
| Q |
63 |
tgaaatgagtgaaggatcgtaaagagaaggtaaaggtgaataattagggttaagg |
117 |
Q |
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| T |
40322371 |
tgaaatgagtgaaagatcgcagagagaaggtaaaggtgaataattagggttaagg |
40322425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 40321028 - 40321061
Alignment:
| Q |
23 |
tttgataaagaaaagggttactgtttatagcatc |
56 |
Q |
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| T |
40321028 |
tttgataaagaaaagggttactgtttataacatc |
40321061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 9071399 - 9071305
Alignment:
| Q |
23 |
tttgataaagaaaagggttactgtttatagcatctaaaggtgaaatgagtgaaggatcgtaaagagaaggtaaaggtgaataattagggttaagg |
117 |
Q |
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||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
9071399 |
tttgataaagaaaagggttactgtttataacatctatagttgaaatgagtgaaagatcgcagagaaaaggtaaaggtgaataattagggttaagg |
9071305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 45518911 - 45518818
Alignment:
| Q |
23 |
tttgataaagaaaagggttactgtttatagcatctaaaggtgaaatgagtgaaggatcgtaaagagaaggtaaaggtgaataattagggttaagg |
117 |
Q |
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|||||||||||||||| ||| |||||||| ||| || || ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
45518911 |
tttgataaagaaaagg-ttattgtttataacatttatagctgaaatgagtgaaagatcgcaaagaaaaggtaaaggtgaataattagggttaagg |
45518818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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