View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11926_high_19 (Length: 226)
Name: NF11926_high_19
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 34431344 - 34431148
Alignment:
| Q |
14 |
cacagacactaacacaggacatgacactgacacgttaacatcgataataattttaaaaaattacaaatgcatatacaaaaagaatttaatcgcatgtgtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34431344 |
cacagacactaacacaggacatgacactgacacgttaacatcgataataattttaaaaaatgacatatgcatatacaaaaagaatttaatcgcatgtgtt |
34431245 |
T |
|
| Q |
114 |
aatgtgtgtcggtgtcagacactgaacaccgaccatgacttctatcagaagtgttagtgatatagaggttgagactatttagaggaatgttgttttt |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34431244 |
aatgtgtgtcggtgtcagacaccgaacaccgaccatgacttctatcagaagtgttagtgatatagaggttgagactatttagaggaatgttgttttt |
34431148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 29519175 - 29519219
Alignment:
| Q |
30 |
ggacatgacactgacacgttaacatcgataataattttaaaaaat |
74 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
29519175 |
ggacatgacactgacacgtcaacaccgataataattttaaaaaat |
29519219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 15454224 - 15454260
Alignment:
| Q |
38 |
cactgacacgttaacatcgataataattttaaaaaat |
74 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15454224 |
cactgacacgtcaacgtcgataataattttaaaaaat |
15454260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University