View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_high_5 (Length: 511)
Name: NF11926_high_5
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 10911659 - 10911840
Alignment:
| Q |
313 |
caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgccattgatatctgtcttgttggtgattctgcttccatggttgt |
412 |
Q |
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| T |
10911659 |
caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatggccgccattgatatctgtcttgttggtgattctgcttccatggttgt |
10911758 |
T |
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| Q |
413 |
tcatggtcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgctgttgctcgtggtgctaaaact |
494 |
Q |
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| T |
10911759 |
tcatggtcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgcagttgctcgtggtgctaaaact |
10911840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 10911364 - 10911595
Alignment:
| Q |
1 |
ctaccaaaataccctgccacgtaggaagcgaaaaccaaattctcatgcatcaaggaatcatcacaagtaaagtaagtacataggaactacccaaaaaagg |
100 |
Q |
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| T |
10911364 |
ctaccaaaataccctgccacgtaggaagcgaaaaccaaattctcatgcatcaacgaatcatcacaagta---------cataggaactacc-aaaaaagg |
10911453 |
T |
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| Q |
101 |
aagtagttgagnnnnnnnnnnnnnnnnnnngatagcaaccatggcaattctaagatcaatactgaaagcaacaacaacaacccttcaacgttcaacatct |
200 |
Q |
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| T |
10911454 |
aagtagttgagtctctctctctctct----gaaagcaaccatggcaattctaagatcaatgctgaaagcaacaaaaac---ccttcatcgttcatcatct |
10911546 |
T |
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| Q |
201 |
cttctccgtaacatgagcaatctcccagaaaacacagtatacacaggtc |
249 |
Q |
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| T |
10911547 |
cttctccgtaacatgagcaatctcccagaaaacacagtatacacaggtc |
10911595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 13733118 - 13732937
Alignment:
| Q |
313 |
caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgccattgatatctgtcttgttggtgattctgcttccatggttgt |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
13733118 |
caatcacaatggtcactgtttatgattacccttctgctgttcacctcgatatggccgccattgatatatctcttgttggtgattctgcttccatggttgt |
13733019 |
T |
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| Q |
413 |
tcatggtcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgctgttgctcgtggtgctaaaact |
494 |
Q |
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| T |
13733018 |
tcatgatcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgcggttgctcgtggtgctaaaact |
13732937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 13724526 - 13724345
Alignment:
| Q |
313 |
caatcacaatggtcactgcttatgattacccttctgctgttcacctcgatatcgccgccattgatatctgtcttgttggtgattctgcttccatggttgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13724526 |
caatcacaatggtcactgcttatgattacccttctgctgttcaccacgatatgaaagccattgatatctgtcttgttggtgattctgcttccatggttgt |
13724427 |
T |
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| Q |
413 |
tcatggtcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgctgttgctcgtggtgctaaaact |
494 |
Q |
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| T |
13724426 |
tcatgatcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgcggttgctcgtggtgctaaaact |
13724345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 13750019 - 13749935
Alignment:
| Q |
410 |
tgttcatggtcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgctgttgctcgtggtgctaaaact |
494 |
Q |
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| T |
13750019 |
tgttcatggtcatgatactactttgcctattactttagatgaaatgcttgttcattgtcgtgcggttgctcgtggtgctaaaact |
13749935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 13724706 - 13724590
Alignment:
| Q |
135 |
gcaaccatggcaattctaagatcaatactgaaagcaacaacaacaacccttcaacgttcaacatctcttctccgtaacatgagcaa--tctcccagaaaa |
232 |
Q |
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| T |
13724706 |
gcaaccatggcaattctaagatcaataacgaaagcaacaaaaacaacccttcatcgttcatcatcttttctctgtaacatgagcaatctctcccagaaaa |
13724607 |
T |
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| Q |
233 |
cacagtatacacaggtc |
249 |
Q |
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| T |
13724606 |
cacagtatacacaggtc |
13724590 |
T |
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