View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11926_high_8 (Length: 419)
Name: NF11926_high_8
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 45641599 - 45641189
Alignment:
| Q |
1 |
aaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaagaaacacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45641599 |
aaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaacaaacacc |
45641500 |
T |
|
| Q |
101 |
ccacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaatatgtg |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641499 |
caacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaatatgtg |
45641400 |
T |
|
| Q |
201 |
gattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactaccagttgacccatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45641399 |
gattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactactagttgacccatt |
45641300 |
T |
|
| Q |
301 |
agggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatcaccacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45641299 |
agggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatcaccacc |
45641200 |
T |
|
| Q |
401 |
ttacctatgct |
411 |
Q |
| |
|
|||||| |||| |
|
|
| T |
45641199 |
ttacctctgct |
45641189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University