View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_low_10 (Length: 392)
Name: NF11926_low_10
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 1702333 - 1701958
Alignment:
| Q |
1 |
atccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcgatttattaa |
100 |
Q |
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| T |
1702333 |
atccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcgatttattaa |
1702234 |
T |
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| Q |
101 |
atacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgt |
200 |
Q |
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| T |
1702233 |
atacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgt |
1702134 |
T |
|
| Q |
201 |
tctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccac |
300 |
Q |
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| T |
1702133 |
tctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccac |
1702034 |
T |
|
| Q |
301 |
catcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaac |
376 |
Q |
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| T |
1702033 |
catcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaac |
1701958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 327
Target Start/End: Complemental strand, 5400962 - 5400743
Alignment:
| Q |
108 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
207 |
Q |
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| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
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| Q |
208 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
307 |
Q |
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| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
5400763 |
T |
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| Q |
308 |
gtagagggatttaactttgt |
327 |
Q |
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| T |
5400762 |
gtaaatagatttgactttgt |
5400743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 327
Target Start/End: Complemental strand, 3541937 - 3541718
Alignment:
| Q |
108 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
207 |
Q |
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|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
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| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
|
| Q |
208 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
307 |
Q |
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| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||||||||||| | ||||||||| |||||||| || |
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| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
3541738 |
T |
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| Q |
308 |
gtagagggatttaactttgt |
327 |
Q |
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||| | ||||| ||||||| |
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| T |
3541737 |
gtaaatagatttgactttgt |
3541718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
174 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
235 |
Q |
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||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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