View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_low_11 (Length: 362)
Name: NF11926_low_11
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 6 - 362
Target Start/End: Original strand, 3598621 - 3598977
Alignment:
| Q |
6 |
agaagcaaaggagattctgatatcattagcaggtaaatgggaggatgtactagatgcaaatgcgttacaggtgatccctctcaagggggcaatgacaaat |
105 |
Q |
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| T |
3598621 |
agaagcaaaggagattctgatatcattagcaggtaaatgggaggatgtactagatgcaaatgcgttacaggtgatccctctcaagggggcaatgacaaat |
3598720 |
T |
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| Q |
106 |
gaggtatttgaaataaagtggccagctacaactgaggaaacctcacgaaaagttcttgttaggatctacggggagggtgtggaaattttctttgataggg |
205 |
Q |
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| T |
3598721 |
gaggtatttgaaataaagtggccagctacaactgaggaaacctcacgaaaagttcttgttaggatctacggggagggtgtggaaattttctttgataggg |
3598820 |
T |
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| Q |
206 |
atgatgaaatacggacatttgagtacatgtcaaagaatggtcagggaccacgtctgcttggacgttttacaaatggacgtgttgaagagtttatccatgc |
305 |
Q |
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| T |
3598821 |
atgatgaaatacggacatttgagtacatgtcaaagaatggtcagggaccacgtctactaggacgttttacaaatggacgtgttgaagagtttatccatgc |
3598920 |
T |
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| Q |
306 |
acgggtaatctcacaccttttatttttaatcttagttctgtagtatagcactcaaac |
362 |
Q |
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| T |
3598921 |
acgggtaatctcacactttttatttttaatcttagttctgtagtatagcactcaaac |
3598977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 15547404 - 15547148
Alignment:
| Q |
7 |
gaagcaaaggagattctgatatcattagcaggtaaatgggaggatgtactagatgcaaatgcgttacaggtgatccctctcaagggggcaatgacaaatg |
106 |
Q |
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| T |
15547404 |
gaagcaaaagagatattgaaatcattagcaaataaatgggaaaatgtattggatgcaaatgagttggaagttattcctcttaaaggggcaatgaccaatg |
15547305 |
T |
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| Q |
107 |
aggtatttgaaataaagtggccagctacaactgaggaaacctcacgaaaagttcttgttaggatctacggggagggtgtggaaattttctttgataggga |
206 |
Q |
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| T |
15547304 |
aggtattccagataaaatggcaaacaacagaaggtgaaatgtcaagaaaggttcttgttagaatctatggtgaaggtactgacattttctttgataggga |
15547205 |
T |
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| Q |
207 |
tgatgaaatacggacatttgagtacatgtcaaagaatggtcagggaccacgtctgct |
263 |
Q |
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| T |
15547204 |
aaacgaaattcgaacattcgcattcatatcaaagaatggacagggacctcgtttgct |
15547148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 312
Target Start/End: Complemental strand, 14334763 - 14334642
Alignment:
| Q |
191 |
ttttctttgatagggatgatgaaatacggacatttgagtacatgtcaaagaatggtcagggaccacgtctgcttggacgttttacaaatggacgtgttga |
290 |
Q |
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| T |
14334763 |
ttttcttcaatagggatgatgaaatccaaacatttgagtgtatgtcgaagaacggacagggtccacgccttcttggtcggttcacgactggtcgagttga |
14334664 |
T |
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| Q |
291 |
agagtttatccatgcacgggta |
312 |
Q |
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| T |
14334663 |
agagttcattcatgcccgggta |
14334642 |
T |
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