View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_low_12 (Length: 351)
Name: NF11926_low_12
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 1702682 - 1702340
Alignment:
| Q |
10 |
gagagaagaagtgtagggataagtgatgagtttgaattttgaggagaaggtgaaggaataataggatggctaaggtgttgaataataagaggatgatgag |
109 |
Q |
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| T |
1702682 |
gagataagaggtgtagggataagtgatgagtttgaattttgaggagaaggtggaggaataataggatggttaaggtgttgaataataagaggatgatgag |
1702583 |
T |
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| Q |
110 |
aaggaaagtgcttgttagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaattg-aaagagtgactcatgaaaggt |
208 |
Q |
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| T |
1702582 |
aaggaaagtgtttgctagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaaatggaaagagtgactcatgaaaggt |
1702483 |
T |
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| Q |
209 |
gacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagaatagccaaagaaaacacatggcatgcttcga |
308 |
Q |
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| T |
1702482 |
gacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagagtagccaaagaaaacacatggcatgcttcga |
1702383 |
T |
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| Q |
309 |
ttggataacttattttgagagtatggtcgaagccatgggtagc |
351 |
Q |
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| T |
1702382 |
ttggataacttattttgagagtatggtcgaagccatgggtagc |
1702340 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 26591960 - 26592018
Alignment:
| Q |
213 |
tgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttg |
271 |
Q |
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| T |
26591960 |
tgtctggagagatataatttttgagtgggaggatggtagcattggtaggcatgatgttg |
26592018 |
T |
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