View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_low_14 (Length: 269)
Name: NF11926_low_14
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 44937 - 44688
Alignment:
| Q |
1 |
cattacagccaccacaagagcatgtgcaatagccacaaaaaacaatcccactaaggcatctccacttagtttatctattgaaataaatttcaaggaatta |
100 |
Q |
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| T |
44937 |
cattacagccaccacaagagcatgtgcaatagccacaaaaaacaaacccactaaggcatctccacttagcttatctattgaaataaatttcaaggaatta |
44838 |
T |
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| Q |
101 |
gtcttagatccatactttctccaaaagattaatttaactgactctagaccaaatacatttgatttataagaccccttttctttatatttcattatgaata |
200 |
Q |
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| T |
44837 |
gtcttagatccatactttctccaaaagattaatttaactgactctagaccaaatacatttgatttataagaccccttttctttatatttcattatgaatg |
44738 |
T |
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| Q |
201 |
ttcttaatagccagagtttgaattatgaacatttagtaaagaacaaaaat |
250 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44737 |
ttcttagtagccagagtttgaattatgaacatttagtaaagaacaaaaat |
44688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 47012 - 46923
Alignment:
| Q |
1 |
cattacagccaccacaagagcatgtgcaatagccacaaaaaacaatcccactaaggcatctccacttagtttatctattgaaataaattt |
90 |
Q |
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|||||| ||||||| |||| ||| ||| |||||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||| |
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| T |
47012 |
cattaccgccaccagaagaacatttgccatagccacaaaaaataatcccactaaaccatctccacttagcttatctaatgaaataaattt |
46923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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