View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11926_low_16 (Length: 253)
Name: NF11926_low_16
Description: NF11926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11926_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 37987413 - 37987178
Alignment:
| Q |
18 |
cccagcaactcaagtacatcacagttctaagagattcttctgcttttttaaatctatcaacagcatcaacatttgcaccagcttgatgaaacacatggtt |
117 |
Q |
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| T |
37987413 |
cccagcaactcaagtacatcacagttctaagagattcttctgcttttttaaatctatcaacagcatcaacatttgcaccagcttgatgaaacacatggtt |
37987314 |
T |
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| Q |
118 |
ctttgatttagagggaaagtgttgtactcttgaggagcctttgtgagaactaataaagttttttcttcgtgatccatctttgattgcctcctccatgttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37987313 |
ctttgatttagagggaaagtgttgtactcttgaggagcctttgtgagaactaataaagttttttctttgtgatccatctttgattgcctcctccatgttt |
37987214 |
T |
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| Q |
218 |
ggaacaacttggagaatatcttagctcatataaatc |
253 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
37987213 |
ggaacaacttggagaatatcttagctcgtataaatc |
37987178 |
T |
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